BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0613.p         (88 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

F1VX09.1 F1VX09_9BURK SSU ribosomal protein S20p                      151   4e-35
A6T112.1 RS20_JANMA 30S ribosomal protein S20                         138   3e-31
A4G7U3.1 RS20_HERAR 30S ribosomal protein S20                         136   9e-31
D9SHJ8.1 D9SHJ8_GALCS 30S ribosomal protein S20                       135   2e-30
Q46XK7.1 RS20_CUPPJ 30S ribosomal protein S20                         134   3e-30

>F1VX09.1 F1VX09_9BURK SSU ribosomal protein S20p
          Length = 87

 Score =  151 bits (381), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 78/87 (89%), Positives = 82/87 (94%)

Query: 1  MANTAQARKRARQAVKQNAHNSSQRSTLRTAIKAVRKAIEAGDKAAATTVFQASVSTIDS 60
          MANTAQARKRARQAVKQNAHNSSQRSTLRTAIKA+RKAIE GDKA AT VFQ+S+S ID 
Sbjct: 1  MANTAQARKRARQAVKQNAHNSSQRSTLRTAIKAIRKAIEGGDKAVATQVFQSSISVIDR 60

Query: 61 IADKKIIHKNKAARHKSRLAAALKALA 87
          IADKKIIHKNKAARHKSR+AAALKALA
Sbjct: 61 IADKKIIHKNKAARHKSRMAAALKALA 87


>A6T112.1 RS20_JANMA 30S ribosomal protein S20
          Length = 87

 Score =  138 bits (347), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 73/78 (93%), Positives = 74/78 (94%)

Query: 1  MANTAQARKRARQAVKQNAHNSSQRSTLRTAIKAVRKAIEAGDKAAATTVFQASVSTIDS 60
          MANTAQARKRARQAVKQNAHNSSQRSTLRTA+KAVRKAIEAGDKAAA  VF ASVSTID 
Sbjct: 1  MANTAQARKRARQAVKQNAHNSSQRSTLRTAVKAVRKAIEAGDKAAAAQVFLASVSTIDR 60

Query: 61 IADKKIIHKNKAARHKSR 78
          IADKKIIHKNKAARHKSR
Sbjct: 61 IADKKIIHKNKAARHKSR 78


>A4G7U3.1 RS20_HERAR 30S ribosomal protein S20
          Length = 87

 Score =  136 bits (343), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 72/78 (92%), Positives = 73/78 (93%)

Query: 1  MANTAQARKRARQAVKQNAHNSSQRSTLRTAIKAVRKAIEAGDKAAATTVFQASVSTIDS 60
          MANTAQARKRARQAVKQNAHNSSQRSTLRTA+KAVRKAIEAGDK AA  VF ASVSTID 
Sbjct: 1  MANTAQARKRARQAVKQNAHNSSQRSTLRTAVKAVRKAIEAGDKTAAAQVFLASVSTIDR 60

Query: 61 IADKKIIHKNKAARHKSR 78
          IADKKIIHKNKAARHKSR
Sbjct: 61 IADKKIIHKNKAARHKSR 78


>D9SHJ8.1 D9SHJ8_GALCS 30S ribosomal protein S20
          Length = 87

 Score =  135 bits (341), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 71/87 (81%), Positives = 80/87 (91%)

Query: 1  MANTAQARKRARQAVKQNAHNSSQRSTLRTAIKAVRKAIEAGDKAAATTVFQASVSTIDS 60
          MAN+AQARKRARQAVKQNAHNSS RS LRTAIK V KAIEAGDK AA +V++ SVST+DS
Sbjct: 1  MANSAQARKRARQAVKQNAHNSSLRSELRTAIKRVIKAIEAGDKTAAQSVYRDSVSTVDS 60

Query: 61 IADKKIIHKNKAARHKSRLAAALKALA 87
          IADKKIIHKNKA+RHKSRL+AA+KA+A
Sbjct: 61 IADKKIIHKNKASRHKSRLSAAIKAMA 87


>Q46XK7.1 RS20_CUPPJ 30S ribosomal protein S20
          Length = 88

 Score =  134 bits (338), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 71/88 (80%), Positives = 81/88 (92%)

Query: 1  MANTAQARKRARQAVKQNAHNSSQRSTLRTAIKAVRKAIEAGDKAAATTVFQASVSTIDS 60
          MAN+AQARKRARQAV QNAHNSS RS LRTA+KAVRKAI+AGDKAAA  +F+ S +TIDS
Sbjct: 1  MANSAQARKRARQAVAQNAHNSSLRSRLRTAVKAVRKAIDAGDKAAAAEIFKNSQATIDS 60

Query: 61 IADKKIIHKNKAARHKSRLAAALKALAA 88
          IADKKI+HKNKAARHKSRL+AA+KA+AA
Sbjct: 61 IADKKIVHKNKAARHKSRLSAAIKAMAA 88