BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0607.p         (190 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IP85.1 D8IP85_HERSS Penicillin-binding 1 (Peptidoglycan synthe...   196   2e-48
E5ARS4.1 E5ARS4_BURRH Multimodular transpeptidase-transglycosyla...   157   7e-37
B2T534.1 B2T534_BURPP Penicillin-binding protein, 1A family           154   8e-36
E1T9W8.1 E1T9W8_BURSG Penicillin-binding protein, 1A family EC=2...   154   9e-36
B1G775.1 B1G775_9BURK Penicillin-binding protein, 1A family           153   1e-35

>D8IP85.1 D8IP85_HERSS Penicillin-binding 1 (Peptidoglycan synthetase)
           transmembrane protein
          Length = 822

 Score =  196 bits (497), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 99/136 (72%), Positives = 105/136 (77%), Gaps = 14/136 (10%)

Query: 47  LAGKTGTTNDAFDGWFAGYQRTLATVVWMGYDQPKSLGSKEFGAQLALPIWVDYMGVALR 106
           LAGKTGTTNDA DGWFAGYQRTLATVVWMGYDQPKSLGSKEFGAQLALPIWVDYM  AL+
Sbjct: 668 LAGKTGTTNDAVDGWFAGYQRTLATVVWMGYDQPKSLGSKEFGAQLALPIWVDYMAKALK 727

Query: 107 GTPQSDTPAPAGIRFIDGEPYYENFTPGNGFVASLGVDGGGVVDALSNFFGWSKNPNSET 166
           G PQ D P P GIRFIDGEPYY+NFTP NG V ++GV    VVDA+SNFFGW+       
Sbjct: 728 GVPQFDLPVPEGIRFIDGEPYYDNFTPNNGLVTNVGVT---VVDAISNFFGWT------- 777

Query: 167 QAAPSSGPA-PSSQAP 181
              PS  PA P S  P
Sbjct: 778 ---PSQAPATPGSTQP 790



 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/47 (80%), Positives = 43/47 (91%)

Query: 1   VSYPAGNGQPNWEPKDDDPPAGPMAMRTALQKSVNLVAIRTLDAIGL 47
           VSYPAG GQPNWEP+DD+ PAGP+ +RTALQKSVNLVAIRTLD IG+
Sbjct: 508 VSYPAGPGQPNWEPRDDETPAGPITVRTALQKSVNLVAIRTLDYIGV 554


>E5ARS4.1 E5ARS4_BURRH Multimodular transpeptidase-transglycosylase PBP 1A
          Length = 890

 Score =  157 bits (397), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 73/99 (73%), Positives = 80/99 (80%)

Query: 47  LAGKTGTTNDAFDGWFAGYQRTLATVVWMGYDQPKSLGSKEFGAQLALPIWVDYMGVALR 106
           LAGKTGTTNDA DGWFAGYQ TL  V WMGYDQPKSLGS+EFGAQLALPIWV YMG ALR
Sbjct: 745 LAGKTGTTNDAKDGWFAGYQHTLVAVAWMGYDQPKSLGSREFGAQLALPIWVQYMGRALR 804

Query: 107 GTPQSDTPAPAGIRFIDGEPYYENFTPGNGFVASLGVDG 145
           G PQ   P P G+  IDGE +Y + TPGNGF+AS+G+D 
Sbjct: 805 GVPQYQAPMPEGLTTIDGELFYADKTPGNGFIASIGLDA 843


>B2T534.1 B2T534_BURPP Penicillin-binding protein, 1A family
          Length = 833

 Score =  154 bits (388), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 75/115 (65%), Positives = 87/115 (75%), Gaps = 4/115 (3%)

Query: 42  LDAIGLAGKTGTTNDAFDGWFAGYQRTLATVVWMGYDQPKSLGSKEFGAQLALPIWVDYM 101
           L    L GKTGTTNDA DGWFAGYQ++L  V WMGYDQPKSLGS+EFGAQLALPIWV+YM
Sbjct: 684 LHRTDLQGKTGTTNDAKDGWFAGYQQSLVAVAWMGYDQPKSLGSREFGAQLALPIWVEYM 743

Query: 102 GVALRGTPQSDTPAPAGIRFIDGEPYYENFTPGNGFVASLGVDG----GGVVDAL 152
             ALRG PQS+   P G+  +DGE +Y + TPGNGFVAS+G+D      GV DA+
Sbjct: 744 QRALRGVPQSEPAQPDGVTSVDGELFYTDMTPGNGFVASIGLDSANPTAGVSDAV 798


>E1T9W8.1 E1T9W8_BURSG Penicillin-binding protein, 1A family EC=2.4.1.129
          Length = 833

 Score =  154 bits (388), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 73/110 (66%), Positives = 86/110 (78%), Gaps = 4/110 (3%)

Query: 47  LAGKTGTTNDAFDGWFAGYQRTLATVVWMGYDQPKSLGSKEFGAQLALPIWVDYMGVALR 106
           L GKTGTTNDA DGWFAGYQ++L  V WMGYDQPK+LGS+EFGAQLALPIWV+YM  ALR
Sbjct: 689 LQGKTGTTNDAKDGWFAGYQQSLVAVAWMGYDQPKTLGSREFGAQLALPIWVEYMQRALR 748

Query: 107 GTPQSDTPAPAGIRFIDGEPYYENFTPGNGFVASLGVDG----GGVVDAL 152
           G PQS+   P G+  +DGE +Y + TPGNGFVAS+G+D      GV DA+
Sbjct: 749 GVPQSEPAQPEGVTTVDGELFYSDMTPGNGFVASIGLDSANPTAGVSDAV 798


>B1G775.1 B1G775_9BURK Penicillin-binding protein, 1A family
          Length = 833

 Score =  153 bits (386), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 73/110 (66%), Positives = 86/110 (78%), Gaps = 4/110 (3%)

Query: 47  LAGKTGTTNDAFDGWFAGYQRTLATVVWMGYDQPKSLGSKEFGAQLALPIWVDYMGVALR 106
           L GKTGTTNDA DGWFAGYQ++L  V WMGYDQPK+LGS+EFGAQLALPIWV+YM  ALR
Sbjct: 689 LQGKTGTTNDAKDGWFAGYQQSLVAVAWMGYDQPKTLGSREFGAQLALPIWVEYMQRALR 748

Query: 107 GTPQSDTPAPAGIRFIDGEPYYENFTPGNGFVASLGVDG----GGVVDAL 152
           G PQS+   P G+  +DGE +Y + TPGNGFVAS+G+D      GV DA+
Sbjct: 749 GVPQSEPAQPDGVTSVDGELFYSDMTPGNGFVASIGLDSANPTAGVSDAV 798