BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0603.p         (157 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IP82.1 D8IP82_HERSS Phosphate regulon two-component response r...   256   1e-66
F1W1I0.1 F1W1I0_9BURK Phosphate regulon transcriptional regulato...   213   9e-54
A4G454.1 A4G454_HERAR Phosphate regulon transcriptional regulato...   195   2e-48
A6T0C9.1 A6T0C9_JANMA Phosphate regulon two-component response r...   194   3e-48
F1VXX9.1 F1VXX9_9BURK Phosphate regulon transcriptional regulato...   193   7e-48

>D8IP82.1 D8IP82_HERSS Phosphate regulon two-component response regulator
           transcription regulator protein
          Length = 230

 Score =  256 bits (653), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 127/155 (81%), Positives = 135/155 (87%)

Query: 2   RARRYXVIMLTAKGMEEDKVKGLNEGADDYVTKPFSPKELVARVQALLRRKAPEVGQQSL 61
           R     VIMLTAKGMEEDKVKGLNEGADDYVTKPFSPKELVARVQALLRRKAPE+G Q+L
Sbjct: 76  RTASLPVIMLTAKGMEEDKVKGLNEGADDYVTKPFSPKELVARVQALLRRKAPEIGSQAL 135

Query: 62  TYGLLGIDTERHRVTVDQQEVELDQAEFKLLRYLVAHPERIFSRAQLLDKVWGDHTFIEE 121
            Y  + ID ER +V+V  + V LDQAEFKLLRYLVAHPERIFSRAQLLDKVWGDHTFIEE
Sbjct: 136 KYRDISIDVERRQVSVADKPVLLDQAEFKLLRYLVAHPERIFSRAQLLDKVWGDHTFIEE 195

Query: 122 RTVDVHIMRLRKSLGAAADYVKTVRGMGYKLSMEE 156
           RTVDVHIMRLRKSLG  A YV+TVRGMGYKLS E+
Sbjct: 196 RTVDVHIMRLRKSLGDLAHYVQTVRGMGYKLSAEQ 230


>F1W1I0.1 F1W1I0_9BURK Phosphate regulon transcriptional regulatory protein
           PhoB
          Length = 231

 Score =  213 bits (541), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 99/143 (69%), Positives = 118/143 (82%)

Query: 8   VIMLTAKGMEEDKVKGLNEGADDYVTKPFSPKELVARVQALLRRKAPEVGQQSLTYGLLG 67
           VIMLTA GM+EDKV+GLN GADDY+TKPFSP+ELVAR+ +LLRR   +  +    YG + 
Sbjct: 82  VIMLTANGMDEDKVRGLNAGADDYITKPFSPRELVARIHSLLRRNRADASRPGNIYGTIV 141

Query: 68  IDTERHRVTVDQQEVELDQAEFKLLRYLVAHPERIFSRAQLLDKVWGDHTFIEERTVDVH 127
           IDTERH VTV    V+LDQ+EF+LL++LVAHP R+FSR+QLLDKVWGD  F+EERTVDVH
Sbjct: 142 IDTERHLVTVADVPVKLDQSEFRLLKFLVAHPARVFSRSQLLDKVWGDEAFLEERTVDVH 201

Query: 128 IMRLRKSLGAAADYVKTVRGMGY 150
           IMRLRKSLG AA Y+KTVR +GY
Sbjct: 202 IMRLRKSLGVAAGYIKTVRSIGY 224


>A4G454.1 A4G454_HERAR Phosphate regulon transcriptional regulatory protein
           PhoB
          Length = 229

 Score =  195 bits (495), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 88/146 (60%), Positives = 115/146 (78%)

Query: 8   VIMLTAKGMEEDKVKGLNEGADDYVTKPFSPKELVARVQALLRRKAPEVGQQSLTYGLLG 67
           +IMLTAK MEEDK+ GL+ GADDYVTKPFSP+EL AR+ ALLRRK PE  Q  +T G + 
Sbjct: 82  IIMLTAKSMEEDKIAGLDNGADDYVTKPFSPRELTARINALLRRKTPEHAQTLMTAGSIS 141

Query: 68  IDTERHRVTVDQQEVELDQAEFKLLRYLVAHPERIFSRAQLLDKVWGDHTFIEERTVDVH 127
           +D     V+++ +++++  AEFKLL++ +AHP+R+FSR+QLLDKVWGDH  IEERTVDVH
Sbjct: 142 LDPISCSVSMNDEKIDIGHAEFKLLKFFLAHPDRVFSRSQLLDKVWGDHVVIEERTVDVH 201

Query: 128 IMRLRKSLGAAADYVKTVRGMGYKLS 153
           ++RLRK+L  A   +KTVR +GY LS
Sbjct: 202 VLRLRKALKEAEHLIKTVRSVGYMLS 227


>A6T0C9.1 A6T0C9_JANMA Phosphate regulon two-component response regulator
          Length = 229

 Score =  194 bits (494), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 88/146 (60%), Positives = 115/146 (78%)

Query: 8   VIMLTAKGMEEDKVKGLNEGADDYVTKPFSPKELVARVQALLRRKAPEVGQQSLTYGLLG 67
           +IMLTAK MEEDK+ GL+ GADDYVTKPFSP+EL AR+ ALLRRK PE  Q  +T G + 
Sbjct: 82  IIMLTAKSMEEDKIAGLDNGADDYVTKPFSPRELTARINALLRRKTPEHSQTLMTAGNIS 141

Query: 68  IDTERHRVTVDQQEVELDQAEFKLLRYLVAHPERIFSRAQLLDKVWGDHTFIEERTVDVH 127
           +D     V+++ +++++  AEFKLL++ +AHP+R+FSR+QLLDKVWGDH  IEERTVDVH
Sbjct: 142 LDPVSCSVSMNDEKIDIGHAEFKLLKFFLAHPDRVFSRSQLLDKVWGDHVVIEERTVDVH 201

Query: 128 IMRLRKSLGAAADYVKTVRGMGYKLS 153
           ++RLRK+L  A   +KTVR +GY LS
Sbjct: 202 VLRLRKALKDAEHLIKTVRSVGYMLS 227


>F1VXX9.1 F1VXX9_9BURK Phosphate regulon transcriptional regulatory protein
           PhoB
          Length = 229

 Score =  193 bits (490), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 89/146 (60%), Positives = 114/146 (78%)

Query: 8   VIMLTAKGMEEDKVKGLNEGADDYVTKPFSPKELVARVQALLRRKAPEVGQQSLTYGLLG 67
           VIMLTAK MEEDK+ GL+ GADDYVTKPFSP+EL AR++ALLRRK+PE  Q  +  G + 
Sbjct: 82  VIMLTAKTMEEDKIAGLDNGADDYVTKPFSPRELTARIKALLRRKSPEHAQSMMRAGPVT 141

Query: 68  IDTERHRVTVDQQEVELDQAEFKLLRYLVAHPERIFSRAQLLDKVWGDHTFIEERTVDVH 127
           +D     V++  Q++E+  AEFKLL++ +AHP+R+FSR QLLDKVWGDH  IEERTVDVH
Sbjct: 142 LDPISCSVSLSDQKIEIGHAEFKLLKFFLAHPDRVFSRTQLLDKVWGDHAVIEERTVDVH 201

Query: 128 IMRLRKSLGAAADYVKTVRGMGYKLS 153
           ++RLRK+L  A   ++TVR +GY LS
Sbjct: 202 VLRLRKALKEAEHLIRTVRSVGYMLS 227