BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0597.p         (141 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IP76.1 D8IP76_HERSS Transcription elongation factor greA 1          211   2e-53
A2RPN7.1 A2RPN7_HERSE Transcription elongation factor greA            211   2e-53
A4G4A7.1 A4G4A7_HERAR Transcription elongation factor greA 1          206   1e-51
A6T084.1 A6T084_JANMA Transcription elongation factor greA 2          199   9e-50
F1W1H3.1 F1W1H3_9BURK Transcription elongation factor GreA            194   3e-48

>D8IP76.1 D8IP76_HERSS Transcription elongation factor greA 1
          Length = 158

 Score =  211 bits (538), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 110/130 (84%), Positives = 121/130 (93%), Gaps = 2/130 (1%)

Query: 12  NAEYXPRAQGDLSENAEYDAAKERQAFIEGRIADLEGKLGSSLIVDPATLSSGADGRVVF 71
           NA    RAQGDLSENAEY++AKERQAFIEGRIADLEGKLG++ IVDPA L+  A+GRVVF
Sbjct: 31  NAIAEARAQGDLSENAEYESAKERQAFIEGRIADLEGKLGAAQIVDPAELN--AEGRVVF 88

Query: 72  AATVDLENLDSGEKVTYQIVGIDEADIKVSKVSVTSPIARALIGKSAGDVVAVEAPSGVR 131
           A+TVDLENLDSGEKVTYQIVG+DEADIK SKVSVTSPIARALIGKSAGDVVAVEAPSG++
Sbjct: 89  ASTVDLENLDSGEKVTYQIVGLDEADIKESKVSVTSPIARALIGKSAGDVVAVEAPSGLK 148

Query: 132 EYEILKVRYV 141
           EYEIL+VRYV
Sbjct: 149 EYEILEVRYV 158


>A2RPN7.1 A2RPN7_HERSE Transcription elongation factor greA
          Length = 158

 Score =  211 bits (538), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 110/130 (84%), Positives = 121/130 (93%), Gaps = 2/130 (1%)

Query: 12  NAEYXPRAQGDLSENAEYDAAKERQAFIEGRIADLEGKLGSSLIVDPATLSSGADGRVVF 71
           NA    RAQGDLSENAEY++AKERQAFIEGRIADLEGKLG++ IVDPA L+  A+GRVVF
Sbjct: 31  NAIAEARAQGDLSENAEYESAKERQAFIEGRIADLEGKLGAAQIVDPAELN--AEGRVVF 88

Query: 72  AATVDLENLDSGEKVTYQIVGIDEADIKVSKVSVTSPIARALIGKSAGDVVAVEAPSGVR 131
           A+TVDLENLDSGEKVTYQIVG+DEADIK SKVSVTSPIARALIGKSAGDVVAVEAPSG++
Sbjct: 89  ASTVDLENLDSGEKVTYQIVGLDEADIKESKVSVTSPIARALIGKSAGDVVAVEAPSGLK 148

Query: 132 EYEILKVRYV 141
           EYEIL+VRYV
Sbjct: 149 EYEILEVRYV 158


>A4G4A7.1 A4G4A7_HERAR Transcription elongation factor greA 1
          Length = 157

 Score =  206 bits (524), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 102/130 (78%), Positives = 118/130 (90%), Gaps = 2/130 (1%)

Query: 12  NAEYXPRAQGDLSENAEYDAAKERQAFIEGRIADLEGKLGSSLIVDPATLSSGADGRVVF 71
           NA    RAQGDLSENA+YDAAKE+Q+FIEGRIADLEGKLG+S I+DP TL   ADGR+VF
Sbjct: 30  NAIAEARAQGDLSENADYDAAKEKQSFIEGRIADLEGKLGTSQIIDPTTLE--ADGRIVF 87

Query: 72  AATVDLENLDSGEKVTYQIVGIDEADIKVSKVSVTSPIARALIGKSAGDVVAVEAPSGVR 131
           AATVDLE+LDSG+KVTYQIVGIDEAD+K  KVS+TSPIARA+IGKS GDVVAVEAP+G+R
Sbjct: 88  AATVDLEDLDSGDKVTYQIVGIDEADLKEKKVSITSPIARAMIGKSVGDVVAVEAPAGIR 147

Query: 132 EYEILKVRYV 141
           EYE+L+VRY+
Sbjct: 148 EYEVLQVRYI 157


>A6T084.1 A6T084_JANMA Transcription elongation factor greA 2
          Length = 157

 Score =  199 bits (507), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 100/130 (76%), Positives = 117/130 (90%), Gaps = 2/130 (1%)

Query: 12  NAEYXPRAQGDLSENAEYDAAKERQAFIEGRIADLEGKLGSSLIVDPATLSSGADGRVVF 71
           NA    RAQGDLSENA+YDAAKE+Q+FIEGRIAD+EGKLG+S ++DP TL   A+GRVVF
Sbjct: 30  NAIAEARAQGDLSENADYDAAKEKQSFIEGRIADIEGKLGTSQVIDPTTLE--AEGRVVF 87

Query: 72  AATVDLENLDSGEKVTYQIVGIDEADIKVSKVSVTSPIARALIGKSAGDVVAVEAPSGVR 131
           AATVDLE+L+SGEKVTYQIVGIDEAD+K  KVS+TSPIARA+IGK AGDVV VEAP+G+R
Sbjct: 88  AATVDLEDLESGEKVTYQIVGIDEADLKEKKVSITSPIARAMIGKYAGDVVGVEAPAGLR 147

Query: 132 EYEILKVRYV 141
           EYEIL+VRY+
Sbjct: 148 EYEILQVRYI 157


>F1W1H3.1 F1W1H3_9BURK Transcription elongation factor GreA
          Length = 158

 Score =  194 bits (493), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 99/130 (76%), Positives = 114/130 (87%), Gaps = 2/130 (1%)

Query: 12  NAEYXPRAQGDLSENAEYDAAKERQAFIEGRIADLEGKLGSSLIVDPATLSSGADGRVVF 71
           NA    RAQGDLSENAEYDAAKERQ+FIEGRI+DLEGKLGSS I+DP TL   ADGR+VF
Sbjct: 31  NAISEARAQGDLSENAEYDAAKERQSFIEGRISDLEGKLGSSQIIDPLTLE--ADGRIVF 88

Query: 72  AATVDLENLDSGEKVTYQIVGIDEADIKVSKVSVTSPIARALIGKSAGDVVAVEAPSGVR 131
            +TV LE+L++G+KVTYQIVG DEAD+K  KVSVTSPIARALIGK AGDVV V+AP+GVR
Sbjct: 89  GSTVYLEDLETGDKVTYQIVGTDEADLKQLKVSVTSPIARALIGKVAGDVVGVQAPAGVR 148

Query: 132 EYEILKVRYV 141
           EYE+L+VRY+
Sbjct: 149 EYEVLEVRYI 158