BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0589.p         (159 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B0KMC9.1 B0KMC9_PSEPG RNA polymerase, sigma-24 subunit, ECF subf...   180   7e-44
Q4KKE1.1 Q4KKE1_PSEF5 RNA polymerase sigma-70 factor, ECF subfamily   179   1e-43
Q2L2C6.1 Q2L2C6_BORA1 RNA polymerase ECF-family sigma factor (Fr...   177   5e-43
Q7WDB8.1 Q7WDB8_BORBR ECF-family sigma factor                         176   1e-42
Q7VZ10.1 Q7VZ10_BORPE ECF-family sigma factor                         174   3e-42

>B0KMC9.1 B0KMC9_PSEPG RNA polymerase, sigma-24 subunit, ECF subfamily
          Length = 168

 Score =  180 bits (456), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 93/159 (58%), Positives = 116/159 (72%)

Query: 1   MAGLYTGHHHWLLGWLRRRTGNPELAADLAQDTFLRIMVSRRDFYLDEARALLATIARGL 60
           +  LY  HH WL GWLR R G+ E AAD+AQDTFLR++V+RR    ++ R  LA IAR L
Sbjct: 10  LDSLYRDHHGWLQGWLRLRLGDRERAADIAQDTFLRLLVTRRLPEQNDGRRFLAQIARNL 69

Query: 61  VIDHFRRCALEAAFLEMLAQLPPEHVPSPEARLAVLETLNQIDAMLAALPAKVRSAFLLS 120
           VID +RR  ++ A+LE LA LP    PS E R  V+ETL QIDAML ++PAKVR AFLLS
Sbjct: 70  VIDQWRRQRIKHAYLESLAALPEPESPSLETRAIVIETLMQIDAMLDSMPAKVREAFLLS 129

Query: 121 QLDGLSYAEIAVRLEVSLSSVQQYMKRAFMACYRVQYGD 159
           Q +GL+Y++IA RLEVS+SSVQ+YM RA  ACY+V Y +
Sbjct: 130 QFEGLTYSQIAERLEVSVSSVQKYMLRAITACYQVLYAE 168


>Q4KKE1.1 Q4KKE1_PSEF5 RNA polymerase sigma-70 factor, ECF subfamily
          Length = 179

 Score =  179 bits (453), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 90/156 (57%), Positives = 114/156 (73%)

Query: 4   LYTGHHHWLLGWLRRRTGNPELAADLAQDTFLRIMVSRRDFYLDEARALLATIARGLVID 63
           LY  HH WL GWLR+R G+ E AAD+AQDTFLR+++S R     E+R+ LA IAR LV+D
Sbjct: 24  LYQDHHGWLQGWLRKRLGDREHAADVAQDTFLRLLLSGRFPGQQESRSYLAQIARNLVVD 83

Query: 64  HFRRCALEAAFLEMLAQLPPEHVPSPEARLAVLETLNQIDAMLAALPAKVRSAFLLSQLD 123
            +RR  +E A+LE +A LP    PS E+R  +LETL QIDAML  +P KVR AF++SQ +
Sbjct: 84  QWRRARIERAYLESIAHLPEPQTPSLESRALILETLMQIDAMLDRMPDKVRQAFVMSQFE 143

Query: 124 GLSYAEIAVRLEVSLSSVQQYMKRAFMACYRVQYGD 159
           GL YA+IA RLEVS+SSVQ+YM RA  ACY+V Y +
Sbjct: 144 GLGYAQIAERLEVSVSSVQKYMTRAIQACYQVLYAE 179


>Q2L2C6.1 Q2L2C6_BORA1 RNA polymerase ECF-family sigma factor (Fragment)
          Length = 169

 Score =  177 bits (449), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 86/153 (56%), Positives = 111/153 (72%)

Query: 3   GLYTGHHHWLLGWLRRRTGNPELAADLAQDTFLRIMVSRRDFYLDEARALLATIARGLVI 62
           GLY  H  WL+GWLRR+ G  + A D+AQD F+RI+  R+   + +ARA L TIARG++I
Sbjct: 14  GLYRQHRSWLMGWLRRKLGGSDHAEDMAQDVFIRIIQGRKQVDVVQARAFLTTIARGMLI 73

Query: 63  DHFRRCALEAAFLEMLAQLPPEHVPSPEARLAVLETLNQIDAMLAALPAKVRSAFLLSQL 122
           DH+RR ALEAA+ + LA LP    P PEAR+ V+++L  +D MLA L  + R AF+LSQ+
Sbjct: 74  DHWRRAALEAAYRDYLASLPQVSEPGPEARIEVMQSLAVLDRMLAGLSPRAREAFMLSQI 133

Query: 123 DGLSYAEIAVRLEVSLSSVQQYMKRAFMACYRV 155
           DGL+Y EIAVRL VS+SSVQQYM +A  ACY V
Sbjct: 134 DGLTYPEIAVRLGVSVSSVQQYMVKAMSACYEV 166


>Q7WDB8.1 Q7WDB8_BORBR ECF-family sigma factor
          Length = 177

 Score =  176 bits (445), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 87/151 (57%), Positives = 108/151 (71%)

Query: 3   GLYTGHHHWLLGWLRRRTGNPELAADLAQDTFLRIMVSRRDFYLDEARALLATIARGLVI 62
           GLY  H  WL GWLRRR G P  A DL QD F+R++  R+   +++ARALLATIA+GLVI
Sbjct: 22  GLYRQHRSWLAGWLRRRLGCPHRAEDLTQDVFVRVIQGRKAVRMEQARALLATIAKGLVI 81

Query: 63  DHFRRCALEAAFLEMLAQLPPEHVPSPEARLAVLETLNQIDAMLAALPAKVRSAFLLSQL 122
           DH RR ALE A+LE LA  P  H PSP+ +  +L+ L ++D +L  LP + R+ FL+SQL
Sbjct: 82  DHQRRAALEHAYLEYLAAQPSGHAPSPQQQAELLQALVELDRLLEGLPPRARAVFLMSQL 141

Query: 123 DGLSYAEIAVRLEVSLSSVQQYMKRAFMACY 153
           +GL YAEIA RL +SLSSVQQYM RA  ACY
Sbjct: 142 EGLGYAEIAQRLRISLSSVQQYMLRAMSACY 172


>Q7VZ10.1 Q7VZ10_BORPE ECF-family sigma factor
          Length = 177

 Score =  174 bits (442), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 87/151 (57%), Positives = 107/151 (70%)

Query: 3   GLYTGHHHWLLGWLRRRTGNPELAADLAQDTFLRIMVSRRDFYLDEARALLATIARGLVI 62
           GLY  H  WL GWLRRR G P  A DL QD F+R++  R+   +++ARALLATIA+GLVI
Sbjct: 22  GLYRQHRSWLAGWLRRRLGCPHRAEDLTQDVFVRVIQGRKAVRMEQARALLATIAKGLVI 81

Query: 63  DHFRRCALEAAFLEMLAQLPPEHVPSPEARLAVLETLNQIDAMLAALPAKVRSAFLLSQL 122
           DH RR ALE A+LE LA  P  H PSP+ +  +L+ L ++D +L  LP   R+ FL+SQL
Sbjct: 82  DHQRRAALEHAYLEYLAAQPSGHAPSPQQQAELLQALVELDRLLEGLPPHARAVFLMSQL 141

Query: 123 DGLSYAEIAVRLEVSLSSVQQYMKRAFMACY 153
           +GL YAEIA RL +SLSSVQQYM RA  ACY
Sbjct: 142 EGLGYAEIAQRLRISLSSVQQYMLRAMSACY 172