BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0566.p (807 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8ITM7.1 D8ITM7_HERSS Transcription accessory protein 1438 0.0 A6T356.1 A6T356_JANMA Tex transcriptional accessory protein 1395 0.0 F1VX63.1 F1VX63_9BURK RNA binding S1 domain protein 1366 0.0 A4G9E0.1 A4G9E0_HERAR Putative transcription accessory protein TEX 1355 0.0 A4SY73.1 A4SY73_POLSQ RNA binding S1 domain protein 1256 0.0 >D8ITM7.1 D8ITM7_HERSS Transcription accessory protein Length = 783 Score = 1438 bits (3723), Expect = 0.0, Method: Compositional matrix adjust. Identities = 700/766 (91%), Positives = 736/766 (96%) Query: 1 MLPSIEQRLALELVAKPVQVAAAIALLDEGATVPFIARYRKEATGGLDDTQLRLLEERLR 60 MLPSIEQRLALEL AKPVQVAAAIALLDEGATVPFIARYRKE TGGLDD QLRLLEERLR Sbjct: 1 MLPSIEQRLALELAAKPVQVAAAIALLDEGATVPFIARYRKEVTGGLDDVQLRLLEERLR 60 Query: 61 YLRELEDRRTAIISSIEEQGKMTPVLLDAIVHAEDKTRLEDLYLPYKLKRRTKAQIAAEA 120 YLRELE RR AII+SIEEQGKMTPVLLDAI HAEDKTRLEDLYLPYK KRRTKAQIAAEA Sbjct: 61 YLRELESRRAAIIASIEEQGKMTPVLLDAITHAEDKTRLEDLYLPYKPKRRTKAQIAAEA 120 Query: 121 GLTELADALLNDPMLNPEEEAAKYLKPAFTTDSGDNPGVADAKAALDGARQILMERFAED 180 GLTELADALLNDP LNPEEEAAK++KPAFTTD+GDNPGV D KAALDGARQILMERF+ED Sbjct: 121 GLTELADALLNDPTLNPEEEAAKFIKPAFTTDNGDNPGVPDTKAALDGARQILMERFSED 180 Query: 181 AELLQALREYITEHGVVESKVIEGKQDAGEKFADYFDYSETIGTIPSHRALALFRGRREE 240 AELLQ+LREY+TEHGVVESKVIEGKQDAGEKFADYFDYSET TIPSHRALALFRGRREE Sbjct: 181 AELLQSLREYLTEHGVVESKVIEGKQDAGEKFADYFDYSETYSTIPSHRALALFRGRREE 240 Query: 241 MLTVVLRLDTEEEKPKWDAPHNPCENRIAARFGVSSKGRPADKWLADTVRWAWRVKVFMH 300 ML V+LRLD+EEEKPKWDAPHNPCE RIA+RFGVS+KGR ADKWL+DTVRWAWRVKVFMH Sbjct: 241 MLNVILRLDSEEEKPKWDAPHNPCEGRIASRFGVSNKGRAADKWLSDTVRWAWRVKVFMH 300 Query: 301 LETELMTGLRERSEAEAINVFARNLKDLLLAAPAGPRATMGLDPGLRTGVKVAVVDATGK 360 LETELMT LRE++EAEAINVFARNLKDLLLAAPAGPRATMGLDPGLRTGVKVA+VDATGK Sbjct: 301 LETELMTNLREKAEAEAINVFARNLKDLLLAAPAGPRATMGLDPGLRTGVKVAIVDATGK 360 Query: 361 VVDTTAIFPHQPRNDWEGSLHTLAKLAEKHNVSLISIGNGTASRETDKLAQELIKMRPEL 420 VV T I+PHQPRNDW GSLHTL++LAEKHNVSLISIGNGTASRETDKLAQ+LIK+RPEL Sbjct: 361 VVATDTIYPHQPRNDWNGSLHTLSQLAEKHNVSLISIGNGTASRETDKLAQDLIKLRPEL 420 Query: 421 KLTKIVVSEAGASVYSASEFASKELPDLDVSIRGAVSIARRLQDPLAELVKIDPKSIGVG 480 KLTKIVVSEAGASVYSASEFASKELPDLDVS+RGAVSIARRLQDPLAELVKIDPKSIGVG Sbjct: 421 KLTKIVVSEAGASVYSASEFASKELPDLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVG 480 Query: 481 QYQHDVGQSQLARSLDAVVEDCVNAVGVDVNTASAPLLARVSGLNASVAQSIVSYRDMKG 540 QYQHDV QSQLARSLDAVVEDCVNAVGVDVNTASAPLLARVSGLNASVAQSIVSYRDMKG Sbjct: 481 QYQHDVSQSQLARSLDAVVEDCVNAVGVDVNTASAPLLARVSGLNASVAQSIVSYRDMKG 540 Query: 541 MFTSRAGLREVPRLGDKTFEQAAGFLRVMNGENPLDASAVHPESYPLVNKILADIKKDVK 600 MF+SRA LREVPRLG+KTFEQAAGFLRVMNGENPLDASAVHPESYPLV KILADIKKDVK Sbjct: 541 MFSSRAALREVPRLGEKTFEQAAGFLRVMNGENPLDASAVHPESYPLVEKILADIKKDVK 600 Query: 601 GVLGESALLKSLSPAKYADEKFGVPTVTDILKELEKPGRDPRPEFTTATFKDGVEEIKDL 660 VLG+++LLK LSPAKYADEKFGVPTVTDILKEL+KPGRDPRPEFTTATFK+GVEEIKDL Sbjct: 601 SVLGQTSLLKGLSPAKYADEKFGVPTVTDILKELDKPGRDPRPEFTTATFKEGVEEIKDL 660 Query: 661 RPDMILEGVVTNVAAFGAFVDIGVHQDGLVHISALSNTFVKDPHTVVKAGQVVKVKVLEV 720 RPDMILEGVVTNVAAFGAFVDIGVHQDGLVHISALSNT+VKDPHTVVKAGQVVKVKVLEV Sbjct: 661 RPDMILEGVVTNVAAFGAFVDIGVHQDGLVHISALSNTYVKDPHTVVKAGQVVKVKVLEV 720 Query: 721 DEKRKRIALTMRLSDSAPAAGSKPEQRGDRNDARRLSQHQGQQSRQ 766 DEKRKRIALTMRL+D+APA G++ EQRGDR D+RRLSQHQ Q+ R+ Sbjct: 721 DEKRKRIALTMRLNDTAPAPGARNEQRGDRTDSRRLSQHQNQRGRE 766 >A6T356.1 A6T356_JANMA Tex transcriptional accessory protein Length = 782 Score = 1395 bits (3611), Expect = 0.0, Method: Compositional matrix adjust. Identities = 686/767 (89%), Positives = 730/767 (95%) Query: 1 MLPSIEQRLALELVAKPVQVAAAIALLDEGATVPFIARYRKEATGGLDDTQLRLLEERLR 60 MLPSIEQRLA+ELVAKP+Q+AAA+ALLDEGATVPFIARYRKE TGGLDDTQLRLLEERLR Sbjct: 1 MLPSIEQRLAVELVAKPIQIAAAVALLDEGATVPFIARYRKEVTGGLDDTQLRLLEERLR 60 Query: 61 YLRELEDRRTAIISSIEEQGKMTPVLLDAIVHAEDKTRLEDLYLPYKLKRRTKAQIAAEA 120 YLRELEDRR AI++SIEEQ KMTP L+DAI+HAEDKTRLEDLYLPYK KRRTKAQIA EA Sbjct: 61 YLRELEDRRAAIVASIEEQKKMTPELMDAIMHAEDKTRLEDLYLPYKQKRRTKAQIAVEA 120 Query: 121 GLTELADALLNDPMLNPEEEAAKYLKPAFTTDSGDNPGVADAKAALDGARQILMERFAED 180 GLT LADALL +P LNPEEEAAKYLKPAFT + +NPGVAD KAALDGARQILMERFAED Sbjct: 121 GLTPLADALLENPALNPEEEAAKYLKPAFTVEGVENPGVADTKAALDGARQILMERFAED 180 Query: 181 AELLQALREYITEHGVVESKVIEGKQDAGEKFADYFDYSETIGTIPSHRALALFRGRREE 240 A LLQALREY+TEHG+VESKV+EGK+DAG KFADYFDYSETI TIPSHRALA+FRGRREE Sbjct: 181 AGLLQALREYLTEHGIVESKVVEGKEDAGAKFADYFDYSETIATIPSHRALAMFRGRREE 240 Query: 241 MLTVVLRLDTEEEKPKWDAPHNPCENRIAARFGVSSKGRPADKWLADTVRWAWRVKVFMH 300 ML V LRLD+EEEKPKWDAPHNPCE RIA+RFG+S++GRPADKWL DTVRW WRVKVFMH Sbjct: 241 MLNVNLRLDSEEEKPKWDAPHNPCEGRIASRFGISNQGRPADKWLFDTVRWTWRVKVFMH 300 Query: 301 LETELMTGLRERSEAEAINVFARNLKDLLLAAPAGPRATMGLDPGLRTGVKVAVVDATGK 360 LETELMT LRE++E EAINVFA NLK LLLAAPAGPRATMGLDPGLRTGVKVAVVDATGK Sbjct: 301 LETELMTNLREKAEVEAINVFALNLKALLLAAPAGPRATMGLDPGLRTGVKVAVVDATGK 360 Query: 361 VVDTTAIFPHQPRNDWEGSLHTLAKLAEKHNVSLISIGNGTASRETDKLAQELIKMRPEL 420 VVDT ++PHQPRNDW+G+LHTLA+LAEKH V+LISIGNGTASRETDKLAQ+LIKMRPEL Sbjct: 361 VVDTATVYPHQPRNDWDGTLHTLAQLAEKHKVALISIGNGTASRETDKLAQDLIKMRPEL 420 Query: 421 KLTKIVVSEAGASVYSASEFASKELPDLDVSIRGAVSIARRLQDPLAELVKIDPKSIGVG 480 KLTKIVVSEAGASVYSASEFAS+ELPD+DVSIRGAVSIARRLQDPLAELVKIDPKSIGVG Sbjct: 421 KLTKIVVSEAGASVYSASEFASRELPDMDVSIRGAVSIARRLQDPLAELVKIDPKSIGVG 480 Query: 481 QYQHDVGQSQLARSLDAVVEDCVNAVGVDVNTASAPLLARVSGLNASVAQSIVSYRDMKG 540 QYQHDVGQ+QLARSLDAVVEDCVNAVGVDVNTASAPLLARVSGLN SVAQSIVSYRDMKG Sbjct: 481 QYQHDVGQTQLARSLDAVVEDCVNAVGVDVNTASAPLLARVSGLNNSVAQSIVSYRDMKG 540 Query: 541 MFTSRAGLREVPRLGDKTFEQAAGFLRVMNGENPLDASAVHPESYPLVNKILADIKKDVK 600 MFTSRA LR VPRLGDKTFEQAAGFLRVM+G+NPLDASAVHPESYPLV KILADIKKDVK Sbjct: 541 MFTSRADLRAVPRLGDKTFEQAAGFLRVMSGDNPLDASAVHPESYPLVEKILADIKKDVK 600 Query: 601 GVLGESALLKSLSPAKYADEKFGVPTVTDILKELEKPGRDPRPEFTTATFKDGVEEIKDL 660 ++G+ +LKSLSPAKYADEKFG+PT+TDILKELEKPGRDPRPEFTTATFKDGVEEI+DL Sbjct: 601 SIIGDEKMLKSLSPAKYADEKFGIPTITDILKELEKPGRDPRPEFTTATFKDGVEEIRDL 660 Query: 661 RPDMILEGVVTNVAAFGAFVDIGVHQDGLVHISALSNTFVKDPHTVVKAGQVVKVKVLEV 720 RPDMILEGVVTNVAAFGAFVDIGVHQDGLVHISALSNTFVKDPHTVVKAGQVVKVKVLEV Sbjct: 661 RPDMILEGVVTNVAAFGAFVDIGVHQDGLVHISALSNTFVKDPHTVVKAGQVVKVKVLEV 720 Query: 721 DEKRKRIALTMRLSDSAPAAGSKPEQRGDRNDARRLSQHQGQQSRQP 767 DEKRKRIALTMRLSDSAP AGSKPEQ+GDRND+RRLSQHQ QQSRQP Sbjct: 721 DEKRKRIALTMRLSDSAPVAGSKPEQKGDRNDSRRLSQHQNQQSRQP 767 >F1VX63.1 F1VX63_9BURK RNA binding S1 domain protein Length = 781 Score = 1366 bits (3535), Expect = 0.0, Method: Compositional matrix adjust. Identities = 677/767 (88%), Positives = 726/767 (94%), Gaps = 1/767 (0%) Query: 1 MLPSIEQRLALELVAKPVQVAAAIALLDEGATVPFIARYRKEATGGLDDTQLRLLEERLR 60 MLPSIEQRLALELVA+P QVAAAIALLDEGATVPFIARYRKEATGGLDD QLRLLEERLR Sbjct: 1 MLPSIEQRLALELVARPAQVAAAIALLDEGATVPFIARYRKEATGGLDDIQLRLLEERLR 60 Query: 61 YLRELEDRRTAIISSIEEQGKMTPVLLDAIVHAEDKTRLEDLYLPYKLKRRTKAQIAAEA 120 YLRELE RR+AI+S+IEEQ KMTP LLD I+HAEDKTRLEDLYLP+KLKRRTKAQIAAEA Sbjct: 61 YLRELEARRSAIVSAIEEQNKMTPALLDMILHAEDKTRLEDLYLPFKLKRRTKAQIAAEA 120 Query: 121 GLTELADALLNDPMLNPEEEAAKYLKPAFTTDSGDNPGVADAKAALDGARQILMERFAED 180 GLTELADALL DP L+PE AA YLKPAF+TDSGDNPGV D KAALDGARQILMERFAED Sbjct: 121 GLTELADALLADPQLDPEVAAAAYLKPAFSTDSGDNPGVVDTKAALDGARQILMERFAED 180 Query: 181 AELLQALREYITEHGVVESKVIEGKQDAGEKFADYFDYSETIGTIPSHRALALFRGRREE 240 A LLQALREY+TEHG+VESKVI+G+QDAG KFADYFDYSET+GTIPSHRALALFRGRREE Sbjct: 181 ATLLQALREYLTEHGIVESKVIDGQQDAGAKFADYFDYSETLGTIPSHRALALFRGRREE 240 Query: 241 MLTVVLRLDTEEEKPKWDAPHNPCENRIAARFGVSSKGRPADKWLADTVRWAWRVKVFMH 300 MLTV+LRLDTE EKPKWDAPHNPCE RIAARFGV + RPADKWLADTVRWAWRVKVFMH Sbjct: 241 MLTVLLRLDTEPEKPKWDAPHNPCEGRIAARFGVRHQNRPADKWLADTVRWAWRVKVFMH 300 Query: 301 LETELMTGLRERSEAEAINVFARNLKDLLLAAPAGPRATMGLDPGLRTGVKVAVVDATGK 360 LETELMTGLRER+E EAINVFA NLK LLLAAPAG ATMGLDPGLRTGVKVAVVDATGK Sbjct: 301 LETELMTGLRERAEVEAINVFALNLKALLLAAPAGQHATMGLDPGLRTGVKVAVVDATGK 360 Query: 361 VVDTTAIFPHQPRNDWEGSLHTLAKLAEKHNVSLISIGNGTASRETDKLAQELIKMRPEL 420 VVDT+ I+PHQPRNDW+GSLHTLA+LAEKH V+LISIGNGTASRETDKLAQ+LIK+RPEL Sbjct: 361 VVDTSTIYPHQPRNDWDGSLHTLAQLAEKHKVTLISIGNGTASRETDKLAQDLIKLRPEL 420 Query: 421 KLTKIVVSEAGASVYSASEFASKELPDLDVSIRGAVSIARRLQDPLAELVKIDPKSIGVG 480 K+TKIVVSEAGASVYSASEFAS+ELPD+DVSIRGAVSIARRLQDPLAELVKIDPKSIGVG Sbjct: 421 KMTKIVVSEAGASVYSASEFASRELPDMDVSIRGAVSIARRLQDPLAELVKIDPKSIGVG 480 Query: 481 QYQHDVGQSQLARSLDAVVEDCVNAVGVDVNTASAPLLARVSGLNASVAQSIVSYRDMKG 540 QYQHDVGQ+QLARSLDAVVEDCVNAVGVDVNTASAPLLARVSGL++SVAQSIV+YRD+KG Sbjct: 481 QYQHDVGQTQLARSLDAVVEDCVNAVGVDVNTASAPLLARVSGLSSSVAQSIVTYRDLKG 540 Query: 541 MFTSRAGLREVPRLGDKTFEQAAGFLRVMNGENPLDASAVHPESYPLVNKILADIKKDVK 600 FTSRA LR+VPRLGDKTFEQAAGFLRVM +NPLDASAVHPESY LV KILADI+KDVK Sbjct: 541 AFTSRAALRDVPRLGDKTFEQAAGFLRVMGSDNPLDASAVHPESYALVQKILADIQKDVK 600 Query: 601 GVLGESALLKSLSPAKYADEKFGVPTVTDILKELEKPGRDPRPEFTTATFKDGVEEIKDL 660 V+G+ LLKSL+PA+YAD+ FGVPT+TDILKELEKPGRDPRPEFTTATFK+GVE ++DL Sbjct: 601 AVIGDERLLKSLNPARYADDTFGVPTITDILKELEKPGRDPRPEFTTATFKEGVEALRDL 660 Query: 661 RPDMILEGVVTNVAAFGAFVDIGVHQDGLVHISALSNTFVKDPHTVVKAGQVVKVKVLEV 720 RPDMILEGVVTNVAAFGAFVDIGVHQDGLVHISALSNTFVKDPH+VVKAGQVV+VKVLEV Sbjct: 661 RPDMILEGVVTNVAAFGAFVDIGVHQDGLVHISALSNTFVKDPHSVVKAGQVVRVKVLEV 720 Query: 721 DEKRKRIALTMRLSDSAPAAGSKPEQRGDRNDARRLSQHQGQQSRQP 767 DEKRKRIALTMRL+DSAP AG+K EQRGDRNDA+RLSQHQ QQ+RQP Sbjct: 721 DEKRKRIALTMRLTDSAPVAGAKVEQRGDRNDAKRLSQHQ-QQTRQP 766 >A4G9E0.1 A4G9E0_HERAR Putative transcription accessory protein TEX Length = 780 Score = 1355 bits (3507), Expect = 0.0, Method: Compositional matrix adjust. Identities = 678/760 (89%), Positives = 719/760 (94%) Query: 1 MLPSIEQRLALELVAKPVQVAAAIALLDEGATVPFIARYRKEATGGLDDTQLRLLEERLR 60 MLPSIEQRLA+EL AKP QVAAAI LLDEGATVPFI+RYRKEATGGLDD QLRLLEERLR Sbjct: 1 MLPSIEQRLAVELAAKPAQVAAAITLLDEGATVPFISRYRKEATGGLDDIQLRLLEERLR 60 Query: 61 YLRELEDRRTAIISSIEEQGKMTPVLLDAIVHAEDKTRLEDLYLPYKLKRRTKAQIAAEA 120 YLRELEDRR AI++SIEEQ KMTP LLDAI+HAEDKTRLEDLYLPYK KRRTKAQIA EA Sbjct: 61 YLRELEDRRAAIVASIEEQNKMTPTLLDAIMHAEDKTRLEDLYLPYKQKRRTKAQIAVEA 120 Query: 121 GLTELADALLNDPMLNPEEEAAKYLKPAFTTDSGDNPGVADAKAALDGARQILMERFAED 180 GLT LADALL DP LNPEEEAAKYLKPAFT + DNPGVAD KAALDGARQILMERFAED Sbjct: 121 GLTPLADALLADPTLNPEEEAAKYLKPAFTVEGIDNPGVADTKAALDGARQILMERFAED 180 Query: 181 AELLQALREYITEHGVVESKVIEGKQDAGEKFADYFDYSETIGTIPSHRALALFRGRREE 240 A LLQALREY+TEHG+VESKV+EGKQDAGEKFADYFDYSETI TIPSHRALA+FRGRREE Sbjct: 181 ATLLQALREYLTEHGIVESKVVEGKQDAGEKFADYFDYSETIATIPSHRALAMFRGRREE 240 Query: 241 MLTVVLRLDTEEEKPKWDAPHNPCENRIAARFGVSSKGRPADKWLADTVRWAWRVKVFMH 300 ML V LRLDTEEEKPKWDAP NPCE+RIAARFG+S++GR ADKWLADTVRW WRVK FMH Sbjct: 241 MLNVNLRLDTEEEKPKWDAPLNPCESRIAARFGISNQGRAADKWLADTVRWTWRVKTFMH 300 Query: 301 LETELMTGLRERSEAEAINVFARNLKDLLLAAPAGPRATMGLDPGLRTGVKVAVVDATGK 360 LETELMT LRE++E EAINVFA NLK LLLAAPAGPRATMGLDPGLRTGVKVAVVDATGK Sbjct: 301 LETELMTNLREKAEVEAINVFALNLKALLLAAPAGPRATMGLDPGLRTGVKVAVVDATGK 360 Query: 361 VVDTTAIFPHQPRNDWEGSLHTLAKLAEKHNVSLISIGNGTASRETDKLAQELIKMRPEL 420 VVDT ++PHQPRNDW+G+LHTL++LAEKH V+LISIGNGTASRETDKLAQ+LIK+RPEL Sbjct: 361 VVDTATVYPHQPRNDWDGTLHTLSQLAEKHKVALISIGNGTASRETDKLAQDLIKLRPEL 420 Query: 421 KLTKIVVSEAGASVYSASEFASKELPDLDVSIRGAVSIARRLQDPLAELVKIDPKSIGVG 480 KLTKIVVSEAGASVYSASEFAS+ELPD+DVSIRGAVSIARRLQDPLAELVKIDPKSIGVG Sbjct: 421 KLTKIVVSEAGASVYSASEFASRELPDMDVSIRGAVSIARRLQDPLAELVKIDPKSIGVG 480 Query: 481 QYQHDVGQSQLARSLDAVVEDCVNAVGVDVNTASAPLLARVSGLNASVAQSIVSYRDMKG 540 QYQHDVGQ+QLARSLDAVVEDCVNAVGVDVNTASAPLLARVSGL++SVAQSIVSYRD KG Sbjct: 481 QYQHDVGQTQLARSLDAVVEDCVNAVGVDVNTASAPLLARVSGLSSSVAQSIVSYRDTKG 540 Query: 541 MFTSRAGLREVPRLGDKTFEQAAGFLRVMNGENPLDASAVHPESYPLVNKILADIKKDVK 600 MFTSRA LR VPRLGDKTFEQAAGFLRVM G+NPLDASAVHPESYPLV KILADIKKDVK Sbjct: 541 MFTSRADLRAVPRLGDKTFEQAAGFLRVMAGDNPLDASAVHPESYPLVEKILADIKKDVK 600 Query: 601 GVLGESALLKSLSPAKYADEKFGVPTVTDILKELEKPGRDPRPEFTTATFKDGVEEIKDL 660 ++G+ LLKSL+PAKYADEKFGVPT+TDILKELEKPGRDPRPEFTTATFKDGVEEI+DL Sbjct: 601 SIIGDDKLLKSLNPAKYADEKFGVPTITDILKELEKPGRDPRPEFTTATFKDGVEEIRDL 660 Query: 661 RPDMILEGVVTNVAAFGAFVDIGVHQDGLVHISALSNTFVKDPHTVVKAGQVVKVKVLEV 720 RPDMILEGVVTNVAAFGAFVDIGVHQDGLVHISALSNTFVKDPHTVVKAGQVVKVKVLEV Sbjct: 661 RPDMILEGVVTNVAAFGAFVDIGVHQDGLVHISALSNTFVKDPHTVVKAGQVVKVKVLEV 720 Query: 721 DEKRKRIALTMRLSDSAPAAGSKPEQRGDRNDARRLSQHQ 760 DEKRKRIALTMRLSD+AP AGSKPEQR DRND++RL+QHQ Sbjct: 721 DEKRKRIALTMRLSDAAPVAGSKPEQRADRNDSKRLAQHQ 760 >A4SY73.1 A4SY73_POLSQ RNA binding S1 domain protein Length = 784 Score = 1256 bits (3249), Expect = 0.0, Method: Compositional matrix adjust. Identities = 620/768 (80%), Positives = 681/768 (88%), Gaps = 4/768 (0%) Query: 1 MLPSIEQRLALELVAKPVQVAAAIALLDEGATVPFIARYRKEATGGLDDTQLRLLEERLR 60 MLPSIEQRLALEL AKP QVAAA+ALLDEGATVPFIARYRKEATGGLDD QLRLLEERL Sbjct: 1 MLPSIEQRLALELSAKPNQVAAAVALLDEGATVPFIARYRKEATGGLDDVQLRLLEERLT 60 Query: 61 YLRELEDRRTAIISSIEEQGKMTPVLLDAIVHAEDKTRLEDLYLPYKLKRRTKAQIAAEA 120 YLRELEDRR I++SIEEQGKMTP LL AI+ AEDKTRLEDLYLPYK KRRTKAQIA EA Sbjct: 61 YLRELEDRRKTIVTSIEEQGKMTPELLKAIMLAEDKTRLEDLYLPYKPKRRTKAQIALEA 120 Query: 121 GLTELADALLNDPMLNPEEEAAKYLKPAFTTDSGDNPGVADAKAALDGARQILMERFAED 180 GL LA+ LL +P LNPE EAAKYLK AF + +NPGV D K AL+GARQILMERFAED Sbjct: 121 GLEPLANDLLANPNLNPEAEAAKYLKEAFKIEETENPGVPDTKTALEGARQILMERFAED 180 Query: 181 AELLQALREYITEHGVVESKVIEGKQDAGEKFADYFDYSETIGTIPSHRALALFRGRREE 240 A L+Q+LR Y+ +HGVVESKVI GK+ GEKF+DYFDYSE+I IPSHRALALFRGRRE+ Sbjct: 181 AALVQSLRTYLQDHGVVESKVIAGKEQEGEKFSDYFDYSESIKAIPSHRALALFRGRREQ 240 Query: 241 MLTVVLRLDTEEEKPKWDAPHNPCENRIAARFGVSSKGRPADKWLADTVRWAWRVKVFMH 300 ML V LRLD+EEEKPKWD+PHNPCE RIA F + + GRPAD+WLADTVRW WR+K +H Sbjct: 241 MLMVSLRLDSEEEKPKWDSPHNPCEMRIATHFKIKNDGRPADQWLADTVRWTWRIKCSLH 300 Query: 301 LETELMTGLRERSEAEAINVFARNLKDLLLAAPAGPRATMGLDPGLRTGVKVAVVDATGK 360 LETELMT LRERSEAEAI+VFARNLKDLLLAAPAGPR T+GLDPG+RTGVKVAVVDATGK Sbjct: 301 LETELMTALRERSEAEAIHVFARNLKDLLLAAPAGPRVTIGLDPGMRTGVKVAVVDATGK 360 Query: 361 VVDTTAIFPHQPRNDWEGSLHTLAKLAEKHNVSLISIGNGTASRETDKLAQELIKMRPEL 420 VVDT I+PHQP+NDW GSL TLAKLAEKH+ +LISIGNGTASRETDKLAQ+LIK +PEL Sbjct: 361 VVDTDVIYPHQPKNDWTGSLLTLAKLAEKHHATLISIGNGTASRETDKLAQDLIKAKPEL 420 Query: 421 KLTKIVVSEAGASVYSASEFASKELPDLDVSIRGAVSIARRLQDPLAELVKIDPKSIGVG 480 LTKIVVSEAGASVYSASE+ASKELP +DVS+RGAVSIARRLQDPLAELVKIDPKSIGVG Sbjct: 421 GLTKIVVSEAGASVYSASEYASKELPGMDVSLRGAVSIARRLQDPLAELVKIDPKSIGVG 480 Query: 481 QYQHDVGQSQLARSLDAVVEDCVNAVGVDVNTASAPLLARVSGLNASVAQSIVSYRDMKG 540 QYQHDV Q+QLA+SL AVVEDCVNAVGVDVNTASAPLL+RVSGL+++VA+ IV+YRD KG Sbjct: 481 QYQHDVMQTQLAKSLVAVVEDCVNAVGVDVNTASAPLLSRVSGLSSTVAEGIVAYRDSKG 540 Query: 541 MFTSRAGLREVPRLGDKTFEQAAGFLRVMNGENPLDASAVHPESYPLVNKILADIKKDVK 600 F SR+ L+ VPRLGDKTFEQAAGFLR+MNG +PLDASAVHPESYPLV KIL DIKK VK Sbjct: 541 AFKSRSDLKSVPRLGDKTFEQAAGFLRIMNGNDPLDASAVHPESYPLVEKILKDIKKGVK 600 Query: 601 GVLGESALLKSLSPAKYADEKFGVPTVTDILKELEKPGRDPRPEFTTATFKDGVEEIKDL 660 V+G+++LLKSLSP KYAD +FG+PTVTDILKELEKPGRDPRPEFTTATFK+GVE+I DL Sbjct: 601 EVIGDASLLKSLSPEKYADGQFGLPTVTDILKELEKPGRDPRPEFTTATFKEGVEKISDL 660 Query: 661 RPDMILEGVVTNVAAFGAFVDIGVHQDGLVHISALSNTFVKDPHTVVKAGQVVKVKVLEV 720 + DMILEGVVTNVAAFGAFVDIGVHQDGLVHISALSNTFVKDPHTVVKAGQVVKVKVLEV Sbjct: 661 KADMILEGVVTNVAAFGAFVDIGVHQDGLVHISALSNTFVKDPHTVVKAGQVVKVKVLEV 720 Query: 721 DEKRKRIALTMRLSDSAPAAGSKPEQRGDRN----DARRLSQHQGQQS 764 DEKRKRIALTMRLSD AP AG KPEQR + R+ + + QQS Sbjct: 721 DEKRKRIALTMRLSDEAPKAGFKPEQRAPNRPKGAEVRKPQEDRRQQS 768