BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0539.p         (151 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8ITK5.1 D8ITK5_HERSS tRNA (cytidine/uridine-2'-O-)-methyltransf...   197   4e-49
Q6J6B9.1 Q6J6B9_9BURK tRNA (cytidine/uridine-2'-O-)-methyltransf...   189   1e-46
A6T2W3.1 A6T2W3_JANMA tRNA (cytidine/uridine-2'-O-)-methyltransf...   187   3e-46
F1VVM8.1 F1VVM8_9BURK tRNA (Cytosine34-2'-O-)-methyltransferase       186   8e-46
A4G948.1 A4G948_HERAR tRNA (cytidine/uridine-2'-O-)-methyltransf...   186   1e-45

>D8ITK5.1 D8ITK5_HERSS tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
           EC=2.1.1.-
          Length = 160

 Score =  197 bits (501), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 89/111 (80%), Positives = 100/111 (90%)

Query: 1   LFHVVLVEPEIPPNTGNIIRLCANTGAQLHLIEPLGFPLDDAKMRRAGLDYHDYASMQVH 60
           +FHVVLVEPEIPPNTGNIIRLCANTGAQLHL+EPLGFPLDDAKMRRAGLDYH+YA+MQVH
Sbjct: 1   MFHVVLVEPEIPPNTGNIIRLCANTGAQLHLVEPLGFPLDDAKMRRAGLDYHEYANMQVH 60

Query: 61  PDWDAFIEKRKSDPDFDSARMFALTTHGSTPFASVAFRPGDVFVFGAKKIG 111
            DWD F+  R+ +P FD ARMFA+TTHGSTPFA +AFRPGD FVFG++  G
Sbjct: 61  QDWDQFLAHRRQEPLFDEARMFAMTTHGSTPFAGLAFRPGDTFVFGSETRG 111


>Q6J6B9.1 Q6J6B9_9BURK tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
           EC=2.1.1.-
          Length = 160

 Score =  189 bits (480), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 85/111 (76%), Positives = 98/111 (88%)

Query: 1   LFHVVLVEPEIPPNTGNIIRLCANTGAQLHLIEPLGFPLDDAKMRRAGLDYHDYASMQVH 60
           +FHVVLVEPEIPPNTGNIIRLCANTGAQLHLIEPLGFPLDD+KMRRAGLDYHDYA+MQVH
Sbjct: 1   MFHVVLVEPEIPPNTGNIIRLCANTGAQLHLIEPLGFPLDDSKMRRAGLDYHDYATMQVH 60

Query: 61  PDWDAFIEKRKSDPDFDSARMFALTTHGSTPFASVAFRPGDVFVFGAKKIG 111
            DW+ F+   +    +D +RMFA+TTHGSTPFAS+ FRPGD+FVFG++  G
Sbjct: 61  ADWNDFVASMRDAGSYDPSRMFAMTTHGSTPFASLQFRPGDIFVFGSETRG 111


>A6T2W3.1 A6T2W3_JANMA tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
           EC=2.1.1.-
          Length = 165

 Score =  187 bits (476), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 87/111 (78%), Positives = 97/111 (87%)

Query: 1   LFHVVLVEPEIPPNTGNIIRLCANTGAQLHLIEPLGFPLDDAKMRRAGLDYHDYASMQVH 60
           LFHVVLVEPEIPPNTGNIIRLCANTGAQLHL+EPLGFPLDDAKMRRAGLDYHDYA M+VH
Sbjct: 6   LFHVVLVEPEIPPNTGNIIRLCANTGAQLHLVEPLGFPLDDAKMRRAGLDYHDYAQMKVH 65

Query: 61  PDWDAFIEKRKSDPDFDSARMFALTTHGSTPFASVAFRPGDVFVFGAKKIG 111
            DW AF+    ++   +  RMFALTTHGSTPFAS+AF+PGDVFVFG++  G
Sbjct: 66  ADWQAFLNSFPAEQPLNHERMFALTTHGSTPFASMAFQPGDVFVFGSETKG 116


>F1VVM8.1 F1VVM8_9BURK tRNA (Cytosine34-2'-O-)-methyltransferase
          Length = 156

 Score =  186 bits (473), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 90/111 (81%), Positives = 96/111 (86%), Gaps = 4/111 (3%)

Query: 1   LFHVVLVEPEIPPNTGNIIRLCANTGAQLHLIEPLGFPLDDAKMRRAGLDYHDYASMQVH 60
           +FHVVLVEPEIPPNTGNIIRLCANTGAQLHLIEPLGFPLDDAKMRRAGLDYHDYA+MQVH
Sbjct: 1   MFHVVLVEPEIPPNTGNIIRLCANTGAQLHLIEPLGFPLDDAKMRRAGLDYHDYATMQVH 60

Query: 61  PDWDAFIEKRKSDPDFDSARMFALTTHGSTPFASVAFRPGDVFVFGAKKIG 111
           PDW  FI   + DP     RMFALTTHGSTPFA+  FRPGDVFVFG++  G
Sbjct: 61  PDWSRFIATVQPDPQ----RMFALTTHGSTPFATGQFRPGDVFVFGSETKG 107


>A4G948.1 A4G948_HERAR tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
           EC=2.1.1.-
          Length = 160

 Score =  186 bits (471), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 86/111 (77%), Positives = 98/111 (88%)

Query: 1   LFHVVLVEPEIPPNTGNIIRLCANTGAQLHLIEPLGFPLDDAKMRRAGLDYHDYASMQVH 60
           +FHVVLVEPEIPPNTGNIIRLCANTGAQLHL+EPLGFPLDDAKMRRAGLDYHDYA M+VH
Sbjct: 1   MFHVVLVEPEIPPNTGNIIRLCANTGAQLHLVEPLGFPLDDAKMRRAGLDYHDYAQMKVH 60

Query: 61  PDWDAFIEKRKSDPDFDSARMFALTTHGSTPFASVAFRPGDVFVFGAKKIG 111
            DW AF++   +D   + ARMFALTTHGSTPFA +AF+PGD+FVFG++  G
Sbjct: 61  HDWQAFLDSFPADQPLNPARMFALTTHGSTPFAGLAFQPGDIFVFGSETKG 111