BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0536.p         (144 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8ITK1.1 D8ITK1_HERSS Cytochrome c oxidase polypeptide II (Cytoc...   220   5e-56
A6T2U5.1 A6T2U5_JANMA Cytochrome c oxidase subunit II                 215   2e-54
A4G945.1 A4G945_HERAR Cytochrome c oxidase, subunit II (Cytochro...   210   5e-53
F1VVN2.1 F1VVN2_9BURK Cytochrome c oxidase polypeptide II             200   6e-50
D8NQ39.1 D8NQ39_RALSO Cytochrome C oxidase polypeptide II (Cytoc...   189   1e-46

>D8ITK1.1 D8ITK1_HERSS Cytochrome c oxidase polypeptide II (Cytochrome aa3
           subunit 2) transmembrane protein EC=1.9.3.1
          Length = 386

 Score =  220 bits (561), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 110/135 (81%), Positives = 119/135 (88%), Gaps = 4/135 (2%)

Query: 1   VPSWAWGDKVVDSQGGPAVLQTNFQPPVTQIAEQIYDLHHLMLIICLVIFVAVFGVMFYS 60
           +P+WA    VVDS GGPAVLQ NFQPPVT+IAEQIYDLH LMLIICLVIFVAVFGVMFYS
Sbjct: 21  LPAWA----VVDSPGGPAVLQMNFQPPVTKIAEQIYDLHILMLIICLVIFVAVFGVMFYS 76

Query: 61  ILKHRKSLGHKSASFHESTTVEIAWTVVPFLIVIGMALPATKTVVAMKDTSNADLTIKAT 120
           I+KHRKS+GHK+++FHEST VEIAWTVVPFLIVIGMALPATKTVVAMKDTSNADLTIK T
Sbjct: 77  IIKHRKSVGHKASTFHESTAVEIAWTVVPFLIVIGMALPATKTVVAMKDTSNADLTIKVT 136

Query: 121 GMQWKXADLTIKATG 135
           GMQWK     +K  G
Sbjct: 137 GMQWKWGYDYLKGEG 151


>A6T2U5.1 A6T2U5_JANMA Cytochrome c oxidase subunit II
          Length = 386

 Score =  215 bits (547), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 108/125 (86%), Positives = 111/125 (88%), Gaps = 4/125 (3%)

Query: 1   VPSWAWGDKVVDSQGGPAVLQTNFQPPVTQIAEQIYDLHHLMLIICLVIFVAVFGVMFYS 60
           +PSWA    V DS GGPAV Q NF  PVTQIAEQIY LH LMLIICLVIFVAVFGVMFYS
Sbjct: 21  MPSWA----VTDSPGGPAVRQLNFHEPVTQIAEQIYSLHTLMLIICLVIFVAVFGVMFYS 76

Query: 61  ILKHRKSLGHKSASFHESTTVEIAWTVVPFLIVIGMALPATKTVVAMKDTSNADLTIKAT 120
           I KHRKSLGHKSA+FHEST VEIAWTVVPFLIVIGMALPATKTVVAMKDTSNAD+TIKAT
Sbjct: 77  IFKHRKSLGHKSATFHESTAVEIAWTVVPFLIVIGMALPATKTVVAMKDTSNADITIKAT 136

Query: 121 GMQWK 125
           GMQWK
Sbjct: 137 GMQWK 141


>A4G945.1 A4G945_HERAR Cytochrome c oxidase, subunit II (Cytochrome aa3
           subunit 2) EC=1.9.3.1
          Length = 386

 Score =  210 bits (535), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 104/125 (83%), Positives = 112/125 (89%), Gaps = 4/125 (3%)

Query: 1   VPSWAWGDKVVDSQGGPAVLQTNFQPPVTQIAEQIYDLHHLMLIICLVIFVAVFGVMFYS 60
           +PSWA    V DS GGPAV Q NF  PVTQIAEQIY LH L+L+ICLVIF+AVFGVMFYS
Sbjct: 21  LPSWA----VTDSPGGPAVRQLNFHQPVTQIAEQIYSLHTLLLVICLVIFLAVFGVMFYS 76

Query: 61  ILKHRKSLGHKSASFHESTTVEIAWTVVPFLIVIGMALPATKTVVAMKDTSNADLTIKAT 120
           I+KHRKS+GHKSA+FHEST VEIAWTVVPFLIVIGMALPATKTVVAMKDTSNAD+TIKAT
Sbjct: 77  IVKHRKSVGHKSATFHESTAVEIAWTVVPFLIVIGMALPATKTVVAMKDTSNADITIKAT 136

Query: 121 GMQWK 125
           GMQWK
Sbjct: 137 GMQWK 141


>F1VVN2.1 F1VVN2_9BURK Cytochrome c oxidase polypeptide II
          Length = 415

 Score =  200 bits (509), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 99/127 (77%), Positives = 107/127 (84%)

Query: 9   KVVDSQGGPAVLQTNFQPPVTQIAEQIYDLHHLMLIICLVIFVAVFGVMFYSILKHRKSL 68
           +V D  GGPAV Q N  P VT+IAEQIY LH  MLIICLVIFVAVFGVMFYSILKHRKSL
Sbjct: 51  EVQDIPGGPAVRQLNLHPGVTKIAEQIYSLHTFMLIICLVIFVAVFGVMFYSILKHRKSL 110

Query: 69  GHKSASFHESTTVEIAWTVVPFLIVIGMALPATKTVVAMKDTSNADLTIKATGMQWKXAD 128
           GHKSA+FHEST VEIAWT+VPF+IVI MALPAT+TVVAMKDTSNAD+TIKATGMQWK   
Sbjct: 111 GHKSATFHESTAVEIAWTIVPFVIVIAMALPATRTVVAMKDTSNADITIKATGMQWKWGY 170

Query: 129 LTIKATG 135
             +K  G
Sbjct: 171 DYLKGEG 177


>D8NQ39.1 D8NQ39_RALSO Cytochrome C oxidase polypeptide II (Cytochrome AA3
           subunit 2) EC=1.9.3.1
          Length = 417

 Score =  189 bits (479), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 92/126 (73%), Positives = 104/126 (82%)

Query: 10  VVDSQGGPAVLQTNFQPPVTQIAEQIYDLHHLMLIICLVIFVAVFGVMFYSILKHRKSLG 69
           V D  GGPAV Q N  PPVT+IA +I+ LH++MLIIC+VIFV VFGVMFYSI KHRKSLG
Sbjct: 25  VEDMPGGPAVRQLNLAPPVTKIAAEIHWLHYMMLIICIVIFVGVFGVMFYSIFKHRKSLG 84

Query: 70  HKSASFHESTTVEIAWTVVPFLIVIGMALPATKTVVAMKDTSNADLTIKATGMQWKXADL 129
           HK A+FHESTTVEI WT+VPFLIVIGMALPAT+ VVAMKDT+N+DLTIKATG QWK    
Sbjct: 85  HKPATFHESTTVEIIWTIVPFLIVIGMALPATRAVVAMKDTTNSDLTIKATGYQWKWGYD 144

Query: 130 TIKATG 135
            +K  G
Sbjct: 145 YLKGEG 150