BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0535.p         (43 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8ITK1.1 D8ITK1_HERSS Cytochrome c oxidase polypeptide II (Cytoc...    86   1e-15
A6T2U5.1 A6T2U5_JANMA Cytochrome c oxidase subunit II                  82   3e-14
A4G945.1 A4G945_HERAR Cytochrome c oxidase, subunit II (Cytochro...    82   4e-14
F1VVN2.1 F1VVN2_9BURK Cytochrome c oxidase polypeptide II              78   4e-13

>D8ITK1.1 D8ITK1_HERSS Cytochrome c oxidase polypeptide II (Cytochrome aa3
           subunit 2) transmembrane protein EC=1.9.3.1
          Length = 386

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 41/43 (95%), Positives = 41/43 (95%)

Query: 1   MPAWKSVLNDTEIAAVITYTRNSWSNKAQENIVQPAEVLAARK 43
           MP WK VLNDTEIAAVITYTRNSWSNKAQENIVQPAEVLAARK
Sbjct: 344 MPPWKGVLNDTEIAAVITYTRNSWSNKAQENIVQPAEVLAARK 386


>A6T2U5.1 A6T2U5_JANMA Cytochrome c oxidase subunit II
          Length = 386

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 39/43 (90%), Positives = 40/43 (93%)

Query: 1   MPAWKSVLNDTEIAAVITYTRNSWSNKAQENIVQPAEVLAARK 43
           MPAWK VL+DTEIAAVITYTRN WSNKA ENIVQPAEVLAARK
Sbjct: 344 MPAWKPVLSDTEIAAVITYTRNHWSNKASENIVQPAEVLAARK 386


>A4G945.1 A4G945_HERAR Cytochrome c oxidase, subunit II (Cytochrome aa3
           subunit 2) EC=1.9.3.1
          Length = 386

 Score = 81.6 bits (200), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/43 (90%), Positives = 40/43 (93%)

Query: 1   MPAWKSVLNDTEIAAVITYTRNSWSNKAQENIVQPAEVLAARK 43
           MPAWK VL+DTEIAAVITYTRN WSNKA ENIVQPAEVLAARK
Sbjct: 344 MPAWKPVLSDTEIAAVITYTRNHWSNKAAENIVQPAEVLAARK 386


>F1VVN2.1 F1VVN2_9BURK Cytochrome c oxidase polypeptide II
          Length = 415

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/43 (90%), Positives = 41/43 (95%), Gaps = 1/43 (2%)

Query: 1   MPAWKSVLNDTEIAAVITYTRNSWSNKAQENIVQPAEVLAARK 43
           MPAWKS L+DT+IAAVITYTRNSWSNKA ENIVQPAEVLAARK
Sbjct: 374 MPAWKS-LSDTDIAAVITYTRNSWSNKAAENIVQPAEVLAARK 415