BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0534.p (744 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q8Y2H3.1 Q8Y2H3_RALSO Probable cytochrome c oxidase polypeptideI... 568 e-160 D8N8Q6.1 D8N8Q6_RALSO Cytochrome C oxidase polypeptide I (Cytoch... 568 e-160 D8NQ38.1 D8NQ38_RALSO Cytochrome C oxidase polypeptide I (Cytoch... 568 e-159 D8NZB4.1 D8NZB4_RALSO Cytochrome C oxidase polypeptide I (Cytoch... 567 e-159 A4G944.1 A4G944_HERAR Cytochrome c oxidase subunit 1 (Cytochrome... 557 e-156 >Q8Y2H3.1 Q8Y2H3_RALSO Probable cytochrome c oxidase polypeptideI(Cytochrome aa3 subunit 1) transmembrane protein EC=1.9.3.1 Length = 534 Score = 568 bits (1465), Expect = e-160, Method: Compositional matrix adjust. Identities = 282/322 (87%), Positives = 295/322 (91%), Gaps = 8/322 (2%) Query: 3 TTVVDHGHDHSHAH--DHGAHSHDDHDHPHGWRRWIFATNHKDIGTLYLWFSFTMLLSGG 60 +T + H DH+H H DH HDHPHGWRRW+FATNHKDIGTLYL FSFTMLLSGG Sbjct: 2 STAITHPQDHAHGHGDDHA------HDHPHGWRRWLFATNHKDIGTLYLLFSFTMLLSGG 55 Query: 61 VLALLIRAELFQPGLQFFRPEFFNQLTTMHGLVMVFGAIMPAFVGFANWMIPLQIGASDM 120 LALLIR ELF+PGLQFF PE FNQ TT+HGLVMVFGAIMPAFVGFANWMIPLQ+GASDM Sbjct: 56 TLALLIRLELFEPGLQFFHPELFNQFTTLHGLVMVFGAIMPAFVGFANWMIPLQVGASDM 115 Query: 121 AFARMNNFSFWLLPPAALLLASSFLVPGGATAAGWTLYAPLSTQMGPGMDMGIFAMHIMG 180 AFARMNNFSFWLLPPAA+LL SF VPGGATAAGWTLYAPLS QMGPGMDM IFA+HIMG Sbjct: 116 AFARMNNFSFWLLPPAAILLVGSFFVPGGATAAGWTLYAPLSVQMGPGMDMAIFAVHIMG 175 Query: 181 ASSIMGSINIIVTILNMRAPGMTLMKMPMFCWTWLITAYLLIAVMPVLAGAITMTLTDRH 240 ASSIMG+INIIVTILNMRAPGMTLMKMPMFCWTWLITAYLLIAVMPVLAGAITM LTDRH Sbjct: 176 ASSIMGAINIIVTILNMRAPGMTLMKMPMFCWTWLITAYLLIAVMPVLAGAITMVLTDRH 235 Query: 241 FGTSFFNAAGGGDPVMYQHIFWFFGHPEVYIMILPAFGIVSQIIPAFARKQLFGYASMVY 300 FGTSFF+AAGGGDPVMYQHIFWFFGHPEVYIMILPAFGIVSQI+PAFARK LFGY+SMVY Sbjct: 236 FGTSFFSAAGGGDPVMYQHIFWFFGHPEVYIMILPAFGIVSQIVPAFARKPLFGYSSMVY 295 Query: 301 ATASIAILSFIVWAHHMFTTGM 322 ATASIAILSFIVWAHHMFTTGM Sbjct: 296 ATASIAILSFIVWAHHMFTTGM 317 Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust. Identities = 177/209 (84%), Positives = 191/209 (91%) Query: 536 LNGTMLIAVPTGVKIFNWIATMWRGSMTFETPMLFSVGFIFVFTMGGFTGLILAVTPIDI 595 + TMLIAVPTGVKIFNWIATMWRGSMTFETPMLF++GFIFVFT+GGFTGLILAV PIDI Sbjct: 326 MYATMLIAVPTGVKIFNWIATMWRGSMTFETPMLFALGFIFVFTIGGFTGLILAVAPIDI 385 Query: 596 QMQDTYYVVAHFHYVLVAGSLFALFAGFYYWGPKWTGFMYNEWRGKFHFWASLITFNVTF 655 Q+QDTYYVVAHFHYVLVAGSLFALFAGFYYWGPKW+G+MYNE RG+ HFW S+I FN+TF Sbjct: 386 QLQDTYYVVAHFHYVLVAGSLFALFAGFYYWGPKWSGYMYNETRGQIHFWGSMIFFNLTF 445 Query: 656 FPMHFLGLAGMPRRYADYPAQFTDFNMVASIGALGFGLSQVYFLFFVVIPSIKGGVKAEA 715 FPMHFLGLAGMPRRYADYP QF DFN +ASIGALGFGL QVYF FFVV+PS +GG KA Sbjct: 446 FPMHFLGLAGMPRRYADYPQQFADFNAIASIGALGFGLMQVYFFFFVVLPSYRGGEKAAD 505 Query: 716 KPWEGAEGLEWTVPSPAPFHTFETPPTVK 744 KPW+GAEGLEWTVPSPAPFHTFE PP VK Sbjct: 506 KPWDGAEGLEWTVPSPAPFHTFEEPPHVK 534 >D8N8Q6.1 D8N8Q6_RALSO Cytochrome C oxidase polypeptide I (Cytochrome AA3 subunit 1) EC=1.9.3.1 Length = 534 Score = 568 bits (1465), Expect = e-160, Method: Compositional matrix adjust. Identities = 281/322 (87%), Positives = 295/322 (91%), Gaps = 8/322 (2%) Query: 3 TTVVDHGHDHSHAH--DHGAHSHDDHDHPHGWRRWIFATNHKDIGTLYLWFSFTMLLSGG 60 +T + H DH+H H DH HDHPHGWRRW+FATNHKDIGTLYL FSFTMLLSGG Sbjct: 2 STAITHPQDHAHGHGDDHA------HDHPHGWRRWLFATNHKDIGTLYLLFSFTMLLSGG 55 Query: 61 VLALLIRAELFQPGLQFFRPEFFNQLTTMHGLVMVFGAIMPAFVGFANWMIPLQIGASDM 120 LALLIR ELF+PGLQFF PE FNQ TT+HGLVMVFGAIMPAFVGFANWMIPLQ+GASDM Sbjct: 56 TLALLIRLELFEPGLQFFHPELFNQFTTLHGLVMVFGAIMPAFVGFANWMIPLQVGASDM 115 Query: 121 AFARMNNFSFWLLPPAALLLASSFLVPGGATAAGWTLYAPLSTQMGPGMDMGIFAMHIMG 180 AFARMNNFSFWLLPPAA+LL SF VPGGATAAGWTLYAPLS QMGPGMDM IFA+HIMG Sbjct: 116 AFARMNNFSFWLLPPAAILLVGSFFVPGGATAAGWTLYAPLSVQMGPGMDMAIFAVHIMG 175 Query: 181 ASSIMGSINIIVTILNMRAPGMTLMKMPMFCWTWLITAYLLIAVMPVLAGAITMTLTDRH 240 ASSIMG+INIIVTILNMRAPGMTLMKMPMFCWTWLITAYLLIAVMPVLAGAITM LTDRH Sbjct: 176 ASSIMGAINIIVTILNMRAPGMTLMKMPMFCWTWLITAYLLIAVMPVLAGAITMVLTDRH 235 Query: 241 FGTSFFNAAGGGDPVMYQHIFWFFGHPEVYIMILPAFGIVSQIIPAFARKQLFGYASMVY 300 FGTSFF+AAGGGDPVMYQHIFWFFGHPEVYIMILPAFGI+SQI+PAFARK LFGY+SMVY Sbjct: 236 FGTSFFSAAGGGDPVMYQHIFWFFGHPEVYIMILPAFGIISQIVPAFARKPLFGYSSMVY 295 Query: 301 ATASIAILSFIVWAHHMFTTGM 322 ATASIAILSFIVWAHHMFTTGM Sbjct: 296 ATASIAILSFIVWAHHMFTTGM 317 Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust. Identities = 176/209 (84%), Positives = 191/209 (91%) Query: 536 LNGTMLIAVPTGVKIFNWIATMWRGSMTFETPMLFSVGFIFVFTMGGFTGLILAVTPIDI 595 + TMLIAVPTGVKIFNWIATMWRGSMTFETPMLF++GFIFVFT+GGFTGLILAV P+DI Sbjct: 326 MYATMLIAVPTGVKIFNWIATMWRGSMTFETPMLFALGFIFVFTIGGFTGLILAVAPVDI 385 Query: 596 QMQDTYYVVAHFHYVLVAGSLFALFAGFYYWGPKWTGFMYNEWRGKFHFWASLITFNVTF 655 Q+QDTYYVVAHFHYVLVAGSLFALFAGFYYWGPKW+G+MYNE RG+ HFW S+I FN+TF Sbjct: 386 QLQDTYYVVAHFHYVLVAGSLFALFAGFYYWGPKWSGYMYNETRGQIHFWGSMIFFNLTF 445 Query: 656 FPMHFLGLAGMPRRYADYPAQFTDFNMVASIGALGFGLSQVYFLFFVVIPSIKGGVKAEA 715 FPMHFLGLAGMPRRYADYP QF DFN +ASIGALGFGL QVYF FFVV+PS +GG KA Sbjct: 446 FPMHFLGLAGMPRRYADYPQQFADFNAIASIGALGFGLMQVYFFFFVVLPSYRGGEKALD 505 Query: 716 KPWEGAEGLEWTVPSPAPFHTFETPPTVK 744 KPW+GAEGLEWTVPSPAPFHTFE PP VK Sbjct: 506 KPWDGAEGLEWTVPSPAPFHTFEEPPHVK 534 >D8NQ38.1 D8NQ38_RALSO Cytochrome C oxidase polypeptide I (Cytochrome AA3 subunit 1) EC=1.9.3.1 Length = 534 Score = 568 bits (1464), Expect = e-159, Method: Compositional matrix adjust. Identities = 282/322 (87%), Positives = 294/322 (91%), Gaps = 8/322 (2%) Query: 3 TTVVDHGHDHSHAH--DHGAHSHDDHDHPHGWRRWIFATNHKDIGTLYLWFSFTMLLSGG 60 +T + H DH+H H DH HDHPHGWRRW+FATNHKDIGTLYL FSF MLLSGG Sbjct: 2 STAITHPQDHAHGHGDDHA------HDHPHGWRRWLFATNHKDIGTLYLLFSFAMLLSGG 55 Query: 61 VLALLIRAELFQPGLQFFRPEFFNQLTTMHGLVMVFGAIMPAFVGFANWMIPLQIGASDM 120 LALLIR ELF+PGLQFF PE FNQ TT+HGLVMVFGAIMPAFVGFANWMIPLQ+GASDM Sbjct: 56 TLALLIRLELFEPGLQFFHPELFNQFTTLHGLVMVFGAIMPAFVGFANWMIPLQVGASDM 115 Query: 121 AFARMNNFSFWLLPPAALLLASSFLVPGGATAAGWTLYAPLSTQMGPGMDMGIFAMHIMG 180 AFARMNNFSFWLLPPAA+LL SF VPGGATAAGWTLYAPLS QMGPGMDM IFA+HIMG Sbjct: 116 AFARMNNFSFWLLPPAAILLVGSFFVPGGATAAGWTLYAPLSVQMGPGMDMAIFAVHIMG 175 Query: 181 ASSIMGSINIIVTILNMRAPGMTLMKMPMFCWTWLITAYLLIAVMPVLAGAITMTLTDRH 240 ASSIMGSINIIVTILNMRAPGMTLMKMPMFCWTWLITAYLLIAVMPVLAGAITM LTDRH Sbjct: 176 ASSIMGSINIIVTILNMRAPGMTLMKMPMFCWTWLITAYLLIAVMPVLAGAITMVLTDRH 235 Query: 241 FGTSFFNAAGGGDPVMYQHIFWFFGHPEVYIMILPAFGIVSQIIPAFARKQLFGYASMVY 300 FGTSFF+AAGGGDPVMYQHIFWFFGHPEVYIMILPAFGIVSQI+PAFARK LFGY+SMVY Sbjct: 236 FGTSFFSAAGGGDPVMYQHIFWFFGHPEVYIMILPAFGIVSQIVPAFARKPLFGYSSMVY 295 Query: 301 ATASIAILSFIVWAHHMFTTGM 322 ATASIAILSFIVWAHHMFTTGM Sbjct: 296 ATASIAILSFIVWAHHMFTTGM 317 Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust. Identities = 177/209 (84%), Positives = 191/209 (91%) Query: 536 LNGTMLIAVPTGVKIFNWIATMWRGSMTFETPMLFSVGFIFVFTMGGFTGLILAVTPIDI 595 + TMLIAVPTGVKIFNWIATMWRGSMTFETPMLF++GFIFVFT+GGFTGLILAV PIDI Sbjct: 326 MYATMLIAVPTGVKIFNWIATMWRGSMTFETPMLFALGFIFVFTIGGFTGLILAVAPIDI 385 Query: 596 QMQDTYYVVAHFHYVLVAGSLFALFAGFYYWGPKWTGFMYNEWRGKFHFWASLITFNVTF 655 Q+QDTYYVVAHFHYVLVAGSLFALFAGFYYWGPKW+G+MYNE RG+ HFW S+I FN+TF Sbjct: 386 QLQDTYYVVAHFHYVLVAGSLFALFAGFYYWGPKWSGYMYNETRGQIHFWGSMIFFNLTF 445 Query: 656 FPMHFLGLAGMPRRYADYPAQFTDFNMVASIGALGFGLSQVYFLFFVVIPSIKGGVKAEA 715 FPMHFLGLAGMPRRYADYP QF DFN +ASIGALGFGL QVYF FFVV+PS +GG KA Sbjct: 446 FPMHFLGLAGMPRRYADYPQQFADFNAIASIGALGFGLMQVYFFFFVVLPSYRGGEKAID 505 Query: 716 KPWEGAEGLEWTVPSPAPFHTFETPPTVK 744 KPWEGAEGLEWTVPSPAPFHTFE PP V+ Sbjct: 506 KPWEGAEGLEWTVPSPAPFHTFEEPPHVR 534 >D8NZB4.1 D8NZB4_RALSO Cytochrome C oxidase polypeptide I (Cytochrome AA3 subunit 1) EC=1.9.3.1 Length = 534 Score = 567 bits (1462), Expect = e-159, Method: Compositional matrix adjust. Identities = 280/322 (86%), Positives = 294/322 (91%), Gaps = 8/322 (2%) Query: 3 TTVVDHGHDHSHAH--DHGAHSHDDHDHPHGWRRWIFATNHKDIGTLYLWFSFTMLLSGG 60 +T + H DH+H H DH HDHPHGWRRW+FATNHKDIGTLYL FSF MLLSGG Sbjct: 2 STAITHPQDHAHGHGDDHA------HDHPHGWRRWLFATNHKDIGTLYLLFSFAMLLSGG 55 Query: 61 VLALLIRAELFQPGLQFFRPEFFNQLTTMHGLVMVFGAIMPAFVGFANWMIPLQIGASDM 120 LALLIR ELF+PGLQFF PE FNQ TT+HGLVMVFGAIMPAFVGFANWM+PLQ+GASDM Sbjct: 56 TLALLIRLELFEPGLQFFHPELFNQFTTLHGLVMVFGAIMPAFVGFANWMVPLQVGASDM 115 Query: 121 AFARMNNFSFWLLPPAALLLASSFLVPGGATAAGWTLYAPLSTQMGPGMDMGIFAMHIMG 180 AFARMNNFSFWLLPPAA+LL SF VPGGATAAGWTLYAPLS QMGPGMDM IFA+HIMG Sbjct: 116 AFARMNNFSFWLLPPAAILLVGSFFVPGGATAAGWTLYAPLSVQMGPGMDMAIFAVHIMG 175 Query: 181 ASSIMGSINIIVTILNMRAPGMTLMKMPMFCWTWLITAYLLIAVMPVLAGAITMTLTDRH 240 ASSIMGSINIIVTILNMRAPGMTLMKMPMFCWTWLITAYLLIAVMPVLAGAITM LTDRH Sbjct: 176 ASSIMGSINIIVTILNMRAPGMTLMKMPMFCWTWLITAYLLIAVMPVLAGAITMVLTDRH 235 Query: 241 FGTSFFNAAGGGDPVMYQHIFWFFGHPEVYIMILPAFGIVSQIIPAFARKQLFGYASMVY 300 FGTSFF+AAGGGDPVMYQHIFWFFGHPEVYIMILPAFGI+SQI+PAFARK LFGY+SMVY Sbjct: 236 FGTSFFSAAGGGDPVMYQHIFWFFGHPEVYIMILPAFGIISQIVPAFARKPLFGYSSMVY 295 Query: 301 ATASIAILSFIVWAHHMFTTGM 322 ATASIAILSFIVWAHHMFTTGM Sbjct: 296 ATASIAILSFIVWAHHMFTTGM 317 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 178/209 (85%), Positives = 190/209 (90%) Query: 536 LNGTMLIAVPTGVKIFNWIATMWRGSMTFETPMLFSVGFIFVFTMGGFTGLILAVTPIDI 595 + TMLIAVPTGVKIFNWIATMWRGSMTFETPMLF++GFIFVFT+GGFTGLILAV PIDI Sbjct: 326 MYATMLIAVPTGVKIFNWIATMWRGSMTFETPMLFALGFIFVFTIGGFTGLILAVAPIDI 385 Query: 596 QMQDTYYVVAHFHYVLVAGSLFALFAGFYYWGPKWTGFMYNEWRGKFHFWASLITFNVTF 655 Q+QDTYYVVAHFHYVLVAGSLFALFAGFYYWGPKW+G+MYNE RGK HFW S+I FN+TF Sbjct: 386 QLQDTYYVVAHFHYVLVAGSLFALFAGFYYWGPKWSGYMYNETRGKIHFWGSMIFFNLTF 445 Query: 656 FPMHFLGLAGMPRRYADYPAQFTDFNMVASIGALGFGLSQVYFLFFVVIPSIKGGVKAEA 715 FPMHFLGLAGMPRRYADYP QF DFN +ASIGALGFGL QVYF F VV+PS +GG KA Sbjct: 446 FPMHFLGLAGMPRRYADYPQQFADFNAIASIGALGFGLMQVYFFFCVVLPSYRGGEKAAD 505 Query: 716 KPWEGAEGLEWTVPSPAPFHTFETPPTVK 744 KPWEGAEGLEWTVPSPAPFHTFE PP VK Sbjct: 506 KPWEGAEGLEWTVPSPAPFHTFEEPPRVK 534 >A4G944.1 A4G944_HERAR Cytochrome c oxidase subunit 1 (Cytochrome c oxidase polypeptide I) (Cytochrome aa3 subunit 1) EC=1.9.3.1 Length = 533 Score = 557 bits (1435), Expect = e-156, Method: Compositional matrix adjust. Identities = 274/292 (93%), Positives = 284/292 (97%) Query: 31 GWRRWIFATNHKDIGTLYLWFSFTMLLSGGVLALLIRAELFQPGLQFFRPEFFNQLTTMH 90 GWRRW++ATNHKDIGTLYLWFSFTMLLSGG LA+LIRAELFQPGLQ +PEFFNQLTTMH Sbjct: 25 GWRRWVYATNHKDIGTLYLWFSFTMLLSGGFLAMLIRAELFQPGLQLMQPEFFNQLTTMH 84 Query: 91 GLVMVFGAIMPAFVGFANWMIPLQIGASDMAFARMNNFSFWLLPPAALLLASSFLVPGGA 150 G++MVFGAIMPAFVGFANWMIPLQIGASDMAFARMNNFSFWLLPPAA+LL SF VPGGA Sbjct: 85 GIMMVFGAIMPAFVGFANWMIPLQIGASDMAFARMNNFSFWLLPPAAVLLVLSFFVPGGA 144 Query: 151 TAAGWTLYAPLSTQMGPGMDMGIFAMHIMGASSIMGSINIIVTILNMRAPGMTLMKMPMF 210 TAAGWTLYAPLSTQMGPGMDM IFA+HIMGASSIMGSINIIVT+LNMRAPGMTLMKMPMF Sbjct: 145 TAAGWTLYAPLSTQMGPGMDMAIFALHIMGASSIMGSINIIVTVLNMRAPGMTLMKMPMF 204 Query: 211 CWTWLITAYLLIAVMPVLAGAITMTLTDRHFGTSFFNAAGGGDPVMYQHIFWFFGHPEVY 270 CWTWLITAYLLIAVMPVLAGAITMTLTDRHFGTSFFNAAGGGDPVMYQHIFWFFGHPEVY Sbjct: 205 CWTWLITAYLLIAVMPVLAGAITMTLTDRHFGTSFFNAAGGGDPVMYQHIFWFFGHPEVY 264 Query: 271 IMILPAFGIVSQIIPAFARKQLFGYASMVYATASIAILSFIVWAHHMFTTGM 322 IMILPAFGIVS IIPAFARKQLFGYASMVYATASIAILSF+VWAHHMFTTGM Sbjct: 265 IMILPAFGIVSHIIPAFARKQLFGYASMVYATASIAILSFMVWAHHMFTTGM 316 Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust. Identities = 186/209 (88%), Positives = 197/209 (94%) Query: 536 LNGTMLIAVPTGVKIFNWIATMWRGSMTFETPMLFSVGFIFVFTMGGFTGLILAVTPIDI 595 + TMLIAVPTGVKIFNW+ATMWRGSMTFETPMLF++GFIFVFT+GGFTGLILAVTPIDI Sbjct: 325 MYATMLIAVPTGVKIFNWVATMWRGSMTFETPMLFAIGFIFVFTIGGFTGLILAVTPIDI 384 Query: 596 QMQDTYYVVAHFHYVLVAGSLFALFAGFYYWGPKWTGFMYNEWRGKFHFWASLITFNVTF 655 Q+QDTYYVVAHFHYVLVAGSLFALFAGFYYWGPKWTGFMYNE RGK HFW SLI FN+TF Sbjct: 385 QLQDTYYVVAHFHYVLVAGSLFALFAGFYYWGPKWTGFMYNETRGKIHFWGSLILFNITF 444 Query: 656 FPMHFLGLAGMPRRYADYPAQFTDFNMVASIGALGFGLSQVYFLFFVVIPSIKGGVKAEA 715 FPMHFLGLAGMPRRYADYPAQFTDFN++ASIG LGFGL QVYFLF VVIPSI+GG A A Sbjct: 445 FPMHFLGLAGMPRRYADYPAQFTDFNVIASIGGLGFGLMQVYFLFAVVIPSIRGGTPAAA 504 Query: 716 KPWEGAEGLEWTVPSPAPFHTFETPPTVK 744 KPW+GAEGLEWTVPSPAPFHTFETPPTVK Sbjct: 505 KPWDGAEGLEWTVPSPAPFHTFETPPTVK 533