BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0531.p (266 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value F1VVN6.1 F1VVN6_9BURK Cytochrome c oxidase polypeptide III 446 e-123 D8ITJ7.1 D8ITJ7_HERSS Cytochrome c oxidase subunit III transmemb... 434 e-120 A4G941.1 A4G941_HERAR Cytochrome c oxidase polypeptide III EC=1.... 414 e-114 A6T2U2.1 A6T2U2_JANMA Cytochrome c oxidase subunit III EC=1.9.3.1 398 e-109 Q1LRS5.1 Q1LRS5_RALME Cytochrome c oxidase, subunit III EC=1.9.3.1 372 e-101 >F1VVN6.1 F1VVN6_9BURK Cytochrome c oxidase polypeptide III Length = 286 Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust. Identities = 223/266 (83%), Positives = 245/266 (92%) Query: 1 VLAGIAMLATMAGASAWVNSYSWGMPLNLIGIVAVLVVLYKWFGQAIGESESGQYSARID 60 V+AG A+L TM GAS WVN SWGMP+N+IG++AVLVVLYKWFG AI ESE G+YSARID Sbjct: 21 VMAGAALLVTMLGASGWVNGTSWGMPVNMIGLLAVLVVLYKWFGDAIAESEGGKYSARID 80 Query: 61 ASFRWSMGWFIFSEVMFFAAFFGALFYARSITMPWLADLDHKVIWPDFAAHWGNIGPART 120 S+RWSM WFIFSEVMFFA FFGALFYARSITMPWL+DLDHKV+WPDFA HWGNIGPA T Sbjct: 81 VSYRWSMAWFIFSEVMFFAGFFGALFYARSITMPWLSDLDHKVLWPDFAGHWGNIGPAGT 140 Query: 121 IESFQTMGPFPIPTINTALLLTSGVTLTISHHALRAGHRAQTAIWLFATVLLGAIFMGFQ 180 +E+F TMGPFPIP+INTALLLTSGVTLT+SHHA+R GHR QTA WLFAT++LGAIFMGFQ Sbjct: 141 VETFTTMGPFPIPSINTALLLTSGVTLTLSHHAIRLGHRMQTAAWLFATIMLGAIFMGFQ 200 Query: 181 AYEYMHAYSELNLKLTSGIYGSTFFMLTGFHGFHVTMGAIMLSVVLYRVLRGHFTPEHHF 240 YEYMHAYSELNLKLTSGIYGSTFFMLTGFHGFHVT+GAIMLSV+LYRVL+GHFT ++HF Sbjct: 201 VYEYMHAYSELNLKLTSGIYGSTFFMLTGFHGFHVTLGAIMLSVILYRVLKGHFTADNHF 260 Query: 241 AFEGAAWYWHFVDVVWLGLYVVVYWL 266 FEGAAWYWHFVDVVWLGLYVVVYWL Sbjct: 261 GFEGAAWYWHFVDVVWLGLYVVVYWL 286 >D8ITJ7.1 D8ITJ7_HERSS Cytochrome c oxidase subunit III transmembrane protein EC=1.9.3.1 Length = 286 Score = 434 bits (1117), Expect = e-120, Method: Compositional matrix adjust. Identities = 225/266 (84%), Positives = 243/266 (91%) Query: 1 VLAGIAMLATMAGASAWVNSYSWGMPLNLIGIVAVLVVLYKWFGQAIGESESGQYSARID 60 ++AGI+ML TM GASAWVN SW +N++GI+ VLVVLY WFG AI ESESG YS RID Sbjct: 21 MMAGISMLITMIGASAWVNGVSWAPYVNILGILMVLVVLYYWFGDAIRESESGLYSERID 80 Query: 61 ASFRWSMGWFIFSEVMFFAAFFGALFYARSITMPWLADLDHKVIWPDFAAHWGNIGPART 120 S+RWSM WFIFSEVMFFAAFFGALFYARSITMPWLADLDHK+IWPDFA WGN+GPA T Sbjct: 81 LSYRWSMSWFIFSEVMFFAAFFGALFYARSITMPWLADLDHKLIWPDFAGQWGNVGPAGT 140 Query: 121 IESFQTMGPFPIPTINTALLLTSGVTLTISHHALRAGHRAQTAIWLFATVLLGAIFMGFQ 180 +E+F TMGPFPIPTINT LLLTSGVTLTISHHA+RAGHR QTA+WLF T+LLGA+FMGFQ Sbjct: 141 VENFTTMGPFPIPTINTLLLLTSGVTLTISHHAMRAGHRTQTAVWLFLTILLGAVFMGFQ 200 Query: 181 AYEYMHAYSELNLKLTSGIYGSTFFMLTGFHGFHVTMGAIMLSVVLYRVLRGHFTPEHHF 240 AYEY+HAYSELNLKL+SGIYGSTFFMLTGFHGFHVTMGAIMLSVVLYRVLRGHFTP HHF Sbjct: 201 AYEYIHAYSELNLKLSSGIYGSTFFMLTGFHGFHVTMGAIMLSVVLYRVLRGHFTPTHHF 260 Query: 241 AFEGAAWYWHFVDVVWLGLYVVVYWL 266 AFEGAAWYWHFVDVVWLGLYVVVYWL Sbjct: 261 AFEGAAWYWHFVDVVWLGLYVVVYWL 286 >A4G941.1 A4G941_HERAR Cytochrome c oxidase polypeptide III EC=1.9.3.1 Length = 288 Score = 414 bits (1063), Expect = e-114, Method: Compositional matrix adjust. Identities = 209/264 (79%), Positives = 234/264 (88%) Query: 3 AGIAMLATMAGASAWVNSYSWGMPLNLIGIVAVLVVLYKWFGQAIGESESGQYSARIDAS 62 AG+++L M GASAWVN SWG L G++ L VLYKWFG AIGESESG Y+ RIDAS Sbjct: 25 AGMSLLTLMLGASAWVNDASWGSYLTWAGLLGFLFVLYKWFGDAIGESESGMYNKRIDAS 84 Query: 63 FRWSMGWFIFSEVMFFAAFFGALFYARSITMPWLADLDHKVIWPDFAAHWGNIGPARTIE 122 +RWSM WFIFSE+MFF AFFGALFYARSI+MPWL DLDHK++WPDFAAHWGN+GPA T+E Sbjct: 85 YRWSMSWFIFSEIMFFGAFFGALFYARSISMPWLGDLDHKILWPDFAAHWGNVGPAGTVE 144 Query: 123 SFQTMGPFPIPTINTALLLTSGVTLTISHHALRAGHRAQTAIWLFATVLLGAIFMGFQAY 182 +F TMGPF IPTINTALLLTSGVTLT+SHHALR R +TA WL ATVLLGA+FMGFQ Y Sbjct: 145 AFTTMGPFWIPTINTALLLTSGVTLTLSHHALRENQRGKTAFWLAATVLLGAVFMGFQVY 204 Query: 183 EYMHAYSELNLKLTSGIYGSTFFMLTGFHGFHVTMGAIMLSVVLYRVLRGHFTPEHHFAF 242 EYMHAYS+LNLKLTSG+YGSTFF+LTGFHGFHVT+GAIMLSVVLYRV++GHFT ++HFAF Sbjct: 205 EYMHAYSDLNLKLTSGVYGSTFFLLTGFHGFHVTLGAIMLSVVLYRVMKGHFTADNHFAF 264 Query: 243 EGAAWYWHFVDVVWLGLYVVVYWL 266 EGAAWYWHFVDVVWLGLYVVVYWL Sbjct: 265 EGAAWYWHFVDVVWLGLYVVVYWL 288 >A6T2U2.1 A6T2U2_JANMA Cytochrome c oxidase subunit III EC=1.9.3.1 Length = 286 Score = 398 bits (1023), Expect = e-109, Method: Compositional matrix adjust. Identities = 207/265 (78%), Positives = 228/265 (86%) Query: 2 LAGIAMLATMAGASAWVNSYSWGMPLNLIGIVAVLVVLYKWFGQAIGESESGQYSARIDA 61 +AG ++L M GAS WVN WG G++ LVVLY WFG AI ESE G Y+ RIDA Sbjct: 22 IAGTSLLVMMLGASGWVNDAGWGAYATFAGLLGFLVVLYYWFGDAIAESEGGLYNKRIDA 81 Query: 62 SFRWSMGWFIFSEVMFFAAFFGALFYARSITMPWLADLDHKVIWPDFAAHWGNIGPARTI 121 S+RWSM WFIFSEVMFFAAFFGALFYARSI MPWL DLD+K++WPDFAAHWGN+GPA T+ Sbjct: 82 SYRWSMSWFIFSEVMFFAAFFGALFYARSIAMPWLGDLDNKILWPDFAAHWGNVGPAGTV 141 Query: 122 ESFQTMGPFPIPTINTALLLTSGVTLTISHHALRAGHRAQTAIWLFATVLLGAIFMGFQA 181 E F TMGPF IPTINTALLL SGVTLTISHHA+R HR +TA WL AT+LLGAIFMGFQ Sbjct: 142 EPFTTMGPFWIPTINTALLLLSGVTLTISHHAIRENHRGKTAFWLAATILLGAIFMGFQV 201 Query: 182 YEYMHAYSELNLKLTSGIYGSTFFMLTGFHGFHVTMGAIMLSVVLYRVLRGHFTPEHHFA 241 YEYMHAYSELNLKLTSG+YGSTFF+LTGFHGFHVT+GAIMLSVVLYRVL+GHFT ++HFA Sbjct: 202 YEYMHAYSELNLKLTSGVYGSTFFLLTGFHGFHVTLGAIMLSVVLYRVLKGHFTADNHFA 261 Query: 242 FEGAAWYWHFVDVVWLGLYVVVYWL 266 FEGAAWYWHFVDVVWLGLYVVVYWL Sbjct: 262 FEGAAWYWHFVDVVWLGLYVVVYWL 286 >Q1LRS5.1 Q1LRS5_RALME Cytochrome c oxidase, subunit III EC=1.9.3.1 Length = 286 Score = 372 bits (954), Expect = e-101, Method: Compositional matrix adjust. Identities = 200/266 (75%), Positives = 219/266 (82%) Query: 1 VLAGIAMLATMAGASAWVNSYSWGMPLNLIGIVAVLVVLYKWFGQAIGESESGQYSARID 60 + A +L T AGA+ WVN W L G++ L VL WFG AI ESE G Y ID Sbjct: 21 ITAAFGLLMTGAGAAGWVNGQPWAPYLCGFGLLWFLFVLKSWFGDAIRESEGGMYGKNID 80 Query: 61 ASFRWSMGWFIFSEVMFFAAFFGALFYARSITMPWLADLDHKVIWPDFAAHWGNIGPART 120 SFRWSMGWFIFSEVMFFAAFFGALFYAR+I MPWL DL++K+IWPDFAA W N+GPA T Sbjct: 81 TSFRWSMGWFIFSEVMFFAAFFGALFYARTIAMPWLGDLNNKIIWPDFAAVWPNMGPAGT 140 Query: 121 IESFQTMGPFPIPTINTALLLTSGVTLTISHHALRAGHRAQTAIWLFATVLLGAIFMGFQ 180 +E FQTMGP+PIPTINTALLLTSGVTLT +HHAL AG R+Q L T+LLGAIFM Q Sbjct: 141 VEDFQTMGPWPIPTINTALLLTSGVTLTWAHHALLAGKRSQLIQGLVLTILLGAIFMCLQ 200 Query: 181 AYEYMHAYSELNLKLTSGIYGSTFFMLTGFHGFHVTMGAIMLSVVLYRVLRGHFTPEHHF 240 AYEYMHAYSELNLKLTSG+YGSTFF+LTGFHGFHVTMGAIML+VVL RVL+GHFTPEHHF Sbjct: 201 AYEYMHAYSELNLKLTSGVYGSTFFLLTGFHGFHVTMGAIMLTVVLIRVLKGHFTPEHHF 260 Query: 241 AFEGAAWYWHFVDVVWLGLYVVVYWL 266 AFEGAAWYWHFVDVVWLGLYVVVYWL Sbjct: 261 AFEGAAWYWHFVDVVWLGLYVVVYWL 286