BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0529.p         (145 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

F1VVN8.1 F1VVN8_9BURK Cytochrome oxidase biogenesis protein Surf...   108   2e-22
A6T2U0.1 A6T2U0_JANMA Uncharacterized conserved protein               107   7e-22
D8ITJ5.1 D8ITJ5_HERSS Transmembrane cytochrome oxidase complex b...   106   1e-21
Q146A4.1 Q146A4_BURXL Putative membrane protein                       100   1e-19
A4G939.1 A4G939_HERAR Putative uncharacterized protein                100   1e-19

>F1VVN8.1 F1VVN8_9BURK Cytochrome oxidase biogenesis protein Surf1,
           facilitates heme A insertion
          Length = 240

 Score =  108 bits (270), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/114 (48%), Positives = 73/114 (64%), Gaps = 2/114 (1%)

Query: 1   LATLIVAAIGVSLGQWQTRRGDEKQAIQAKMAARQSAPAMTLENAAGIDVAEAEFRHVKL 60
           +A  ++  +G+SL QWQTRR  EKQ I+A++ AR SAP M L  A  +     E+R V +
Sbjct: 13  IAAALLVLLGISLAQWQTRRAAEKQQIEAQLTARASAPVMAL-GATPVQADALEYRRVSV 71

Query: 61  RGRFVPAWVTYLENRPYNGVPGFYVLMPFKIAGSAESAILIERGWAPXSPPTRA 114
           RG FV  W  YL+NRP +G PG YV+MPF+IAGS    +L+ERGW   +   RA
Sbjct: 72  RGEFVSDWPVYLDNRPQDGRPGLYVVMPFRIAGSTNH-VLVERGWIALNTANRA 124


>A6T2U0.1 A6T2U0_JANMA Uncharacterized conserved protein
          Length = 237

 Score =  107 bits (266), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 52/105 (49%), Positives = 74/105 (70%), Gaps = 2/105 (1%)

Query: 10  GVSLGQWQTRRGDEKQAIQAKMAARQSAPAMTLENAAGIDVAEAEFRHVKLRGRFVPAWV 69
           G+SLGQWQTRR  EK AI+ K+  RQ+A ++ L ++A ++  + EFR + ++G F+  W 
Sbjct: 22  GLSLGQWQTRRAAEKIAIEQKIHERQAAASLQLSDSA-LNPDDIEFRRLSVKGEFLQDWP 80

Query: 70  TYLENRPYNGVPGFYVLMPFKIAGSAESAILIERGWAPXSPPTRA 114
            YL+NRP+NGV GFY+LMPFK+AGS +  IL+ RGW P +   R 
Sbjct: 81  VYLDNRPHNGVAGFYLLMPFKVAGS-QLHILVARGWIPRNVADRT 124


>D8ITJ5.1 D8ITJ5_HERSS Transmembrane cytochrome oxidase complex biogenesis
           factor transmembrane protein
          Length = 240

 Score =  106 bits (265), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 58/107 (54%), Positives = 72/107 (67%), Gaps = 4/107 (3%)

Query: 2   ATLIVAAIGVSLGQWQTRRGDEKQAIQAKMAARQS-APAMTLENAAGIDVAEAEFRHVKL 60
           A LIVAA G++LGQWQT R  EKQA+QA+M AR + AP   L         + EFR V L
Sbjct: 14  AMLIVAAAGIALGQWQTHRAQEKQALQARMQARAAEAPLSALPPDD--QSLQDEFRQVSL 71

Query: 61  RGRFVPAWVTYLENRPYNGVPGFYVLMPFKIAGSAESAILIERGWAP 107
           RG+F+P W  YLENRP+ G  GF+VL  FK  GSA+ A+++ RGWAP
Sbjct: 72  RGQFIPQWTLYLENRPHQGAVGFHVLTLFKPEGSAQ-AVVVARGWAP 117


>Q146A4.1 Q146A4_BURXL Putative membrane protein
          Length = 238

 Score =  100 bits (248), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 49/107 (45%), Positives = 70/107 (65%), Gaps = 3/107 (2%)

Query: 1   LATLIVAAIGVSLGQWQTRRGDEKQAIQAKMAARQSAPAMTLENAAGIDVAEAEFRHVKL 60
           L  L+V  + V LG WQ  R  +K+A++A++   ++APA  + +AA +++ + EF HVK 
Sbjct: 9   LLILLVIVVTVRLGFWQRDRAHQKEALEARITQFENAPAQPV-SAAPVELKDIEFHHVKA 67

Query: 61  RGRFVPAWVTYLENRPYNGVPGFYVLMPFKIAGSAESAILIERGWAP 107
           RG FV   V YL+NRPYN  PGFYV+MPFK+A      +L+ RGW P
Sbjct: 68  RGSFVADKVVYLDNRPYNDQPGFYVVMPFKLADGG--YVLVNRGWLP 112


>A4G939.1 A4G939_HERAR Putative uncharacterized protein
          Length = 237

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/104 (50%), Positives = 68/104 (65%), Gaps = 2/104 (1%)

Query: 10  GVSLGQWQTRRGDEKQAIQAKMAARQSAPAMTLENAAGIDVAEAEFRHVKLRGRFVPAWV 69
           G+SL QWQTRR  EK  I A++  RQ+APA+ L  A      + E+R V ++G F+  W 
Sbjct: 22  GLSLAQWQTRRAVEKLTIAAQLQERQAAPAIRL-GALLQSPEDLEYRRVLVKGEFLRDWP 80

Query: 70  TYLENRPYNGVPGFYVLMPFKIAGSAESAILIERGWAPXSPPTR 113
            YL+NRP+NGV GFY+LMPFKIA S    +L+ RGW P +P  R
Sbjct: 81  VYLDNRPHNGVAGFYLLMPFKIAAS-NLHVLVARGWIPRNPADR 123