BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0517.p (296 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8ITJ0.1 D8ITJ0_HERSS RNA polymerase sigma factor 563 e-158 A6T2T5.1 A6T2T5_JANMA RNA polymerase sigma factor 531 e-149 F1W1J6.1 F1W1J6_9BURK RNA polymerase sigma factor RpoH 530 e-149 A4G934.1 A4G934_HERAR RNA polymerase sigma factor 530 e-148 C3XCV3.1 C3XCV3_OXAFO RNA polymerase sigma factor 459 e-127 >D8ITJ0.1 D8ITJ0_HERSS RNA polymerase sigma factor Length = 299 Score = 563 bits (1450), Expect = e-158, Method: Compositional matrix adjust. Identities = 275/299 (91%), Positives = 288/299 (96%), Gaps = 3/299 (1%) Query: 1 MKSA---TALMPVETNALALGFSGSLGNIDAYISAVNRLPMLTQAEEVSLARALREKNDL 57 MK+A TALMP E+NALALGFSGSLGNIDAYISAVNRLPMLT EEV LAR LREKNDL Sbjct: 1 MKTASAQTALMPAESNALALGFSGSLGNIDAYISAVNRLPMLTHEEEVKLARDLREKNDL 60 Query: 58 GAAQKLVLSHLRLVVSIARGYLGYGLPHADLIQEGNIGLMKAVKRFDPDQNVRLVSYAMH 117 GAAQK+VLSHLRLVVSIARGYLGYGLPHADLIQEGNIGLMKAVKRFDP QNVRLVSYAMH Sbjct: 61 GAAQKMVLSHLRLVVSIARGYLGYGLPHADLIQEGNIGLMKAVKRFDPAQNVRLVSYAMH 120 Query: 118 WIKAEMHEYILKNWRLVKVATTKAQRKLFFNLRSHKTGLDAMTPAQVDALAKTLDVKREE 177 WIKAE+HEYILKNWRLVKVATTKAQRKLFFNLRSHK GLDAMTPAQV+ALAKTLDVKREE Sbjct: 121 WIKAEIHEYILKNWRLVKVATTKAQRKLFFNLRSHKEGLDAMTPAQVEALAKTLDVKREE 180 Query: 178 VIEMETRLSGRDVALEAPTDDDDDKFAPIAYLSSDNNEPTRVMEAKQYDRLQSEGLEAAL 237 VIEMETRLSGRD+ALE+PTDD+DDKFAPIAYLSSDN+EPTRV+EAKQYDRLQSEGLEAAL Sbjct: 181 VIEMETRLSGRDIALESPTDDEDDKFAPIAYLSSDNSEPTRVIEAKQYDRLQSEGLEAAL 240 Query: 238 SKLDDRSRRIVEARWLANDDGSGATLHELADEFGVSAERIRQIEAVALKKMKGSLQAFA 296 SKLD+RSRRIVEARWLANDDGSGATLHELADEFGVSAERIRQIEAVALKKMK SLQA++ Sbjct: 241 SKLDERSRRIVEARWLANDDGSGATLHELADEFGVSAERIRQIEAVALKKMKTSLQAYS 299 >A6T2T5.1 A6T2T5_JANMA RNA polymerase sigma factor Length = 298 Score = 531 bits (1367), Expect = e-149, Method: Compositional matrix adjust. Identities = 258/296 (87%), Positives = 279/296 (94%), Gaps = 1/296 (0%) Query: 1 MKSATALMPVETNALALGFSGSLGNIDAYISAVNRLPMLTQAEEVSLARALREKNDLGAA 60 + ++TAL+P +N LALGFSG+LGNIDAYISAVNRLPMLT EE+SLAR LR++NDLGAA Sbjct: 4 VSASTALVP-NSNMLALGFSGALGNIDAYISAVNRLPMLTHEEEMSLARRLRDENDLGAA 62 Query: 61 QKLVLSHLRLVVSIARGYLGYGLPHADLIQEGNIGLMKAVKRFDPDQNVRLVSYAMHWIK 120 QKLVLSHLRLVVSIARGYLGYGLPHADLIQEGNIGLMKAVKRFDPDQ VRLVSY+MHWIK Sbjct: 63 QKLVLSHLRLVVSIARGYLGYGLPHADLIQEGNIGLMKAVKRFDPDQGVRLVSYSMHWIK 122 Query: 121 AEMHEYILKNWRLVKVATTKAQRKLFFNLRSHKTGLDAMTPAQVDALAKTLDVKREEVIE 180 AEMHEYILKNWRLVKVATTKAQRKLFFNLRSHKTGLD+MTP QVD LAKTL+VKREEVIE Sbjct: 123 AEMHEYILKNWRLVKVATTKAQRKLFFNLRSHKTGLDSMTPDQVDELAKTLNVKREEVIE 182 Query: 181 METRLSGRDVALEAPTDDDDDKFAPIAYLSSDNNEPTRVMEAKQYDRLQSEGLEAALSKL 240 METRLSGRD+ALEAPTDD+DDKFAPIAYLSSD EPT+V+E++Q+DRLQ+EGL AL KL Sbjct: 183 METRLSGRDIALEAPTDDEDDKFAPIAYLSSDMQEPTKVLESQQFDRLQTEGLSNALGKL 242 Query: 241 DDRSRRIVEARWLANDDGSGATLHELADEFGVSAERIRQIEAVALKKMKGSLQAFA 296 D RSRRIVEARWLANDDGSGATLHELADEFGVSAERIRQIEAVALKKMKGSL A+A Sbjct: 243 DARSRRIVEARWLANDDGSGATLHELADEFGVSAERIRQIEAVALKKMKGSLAAYA 298 >F1W1J6.1 F1W1J6_9BURK RNA polymerase sigma factor RpoH Length = 298 Score = 530 bits (1366), Expect = e-149, Method: Compositional matrix adjust. Identities = 255/284 (89%), Positives = 273/284 (96%) Query: 13 NALALGFSGSLGNIDAYISAVNRLPMLTQAEEVSLARALREKNDLGAAQKLVLSHLRLVV 72 NALALGF+G+LGNID+YISAVNRLPMLT EE+SLAR LR++NDLGAAQ +VLSHLRLVV Sbjct: 15 NALALGFTGTLGNIDSYISAVNRLPMLTHEEEMSLARRLRDQNDLGAAQGMVLSHLRLVV 74 Query: 73 SIARGYLGYGLPHADLIQEGNIGLMKAVKRFDPDQNVRLVSYAMHWIKAEMHEYILKNWR 132 SIARGYLGYGLPHADLIQEGNIGLMKAVKRFDPDQ VRLVSYAMHWIKAEMHEYILKNWR Sbjct: 75 SIARGYLGYGLPHADLIQEGNIGLMKAVKRFDPDQGVRLVSYAMHWIKAEMHEYILKNWR 134 Query: 133 LVKVATTKAQRKLFFNLRSHKTGLDAMTPAQVDALAKTLDVKREEVIEMETRLSGRDVAL 192 LVKVATTKAQRKLFFNLRSHKTGLD+MTPAQV+ALA+TL+VKREEVIEMETRLSGRD+AL Sbjct: 135 LVKVATTKAQRKLFFNLRSHKTGLDSMTPAQVEALAQTLNVKREEVIEMETRLSGRDIAL 194 Query: 193 EAPTDDDDDKFAPIAYLSSDNNEPTRVMEAKQYDRLQSEGLEAALSKLDDRSRRIVEARW 252 EAPTDD+DDKFAPIAYLSSD NEPT V+EA+QYDRLQS+GL AL+KLD+RSRRIVEARW Sbjct: 195 EAPTDDEDDKFAPIAYLSSDRNEPTNVLEAQQYDRLQSDGLSQALNKLDERSRRIVEARW 254 Query: 253 LANDDGSGATLHELADEFGVSAERIRQIEAVALKKMKGSLQAFA 296 LANDDGSGATLHELA EFGVSAERIRQIEAVALKKMKGSL AFA Sbjct: 255 LANDDGSGATLHELAKEFGVSAERIRQIEAVALKKMKGSLAAFA 298 >A4G934.1 A4G934_HERAR RNA polymerase sigma factor Length = 298 Score = 530 bits (1364), Expect = e-148, Method: Compositional matrix adjust. Identities = 255/294 (86%), Positives = 276/294 (93%) Query: 3 SATALMPVETNALALGFSGSLGNIDAYISAVNRLPMLTQAEEVSLARALREKNDLGAAQK 62 SA+ M +N ++LGFSG+LGNIDAYISAVNRLPMLT EE+SLA+ LR+ NDLGAAQK Sbjct: 5 SASTAMISPSNMMSLGFSGALGNIDAYISAVNRLPMLTHEEEISLAKRLRDDNDLGAAQK 64 Query: 63 LVLSHLRLVVSIARGYLGYGLPHADLIQEGNIGLMKAVKRFDPDQNVRLVSYAMHWIKAE 122 LVLSHLRLVVSIARGYLGYGLPHADLIQEGNIGLMKAVKRFDPDQ VRLVSY+MHWIKAE Sbjct: 65 LVLSHLRLVVSIARGYLGYGLPHADLIQEGNIGLMKAVKRFDPDQGVRLVSYSMHWIKAE 124 Query: 123 MHEYILKNWRLVKVATTKAQRKLFFNLRSHKTGLDAMTPAQVDALAKTLDVKREEVIEME 182 MHEYILKNWRLVKVATTKAQRKLFFNLRSHKTGLDAMTP QV+ALAKTL+VKREEVIEME Sbjct: 125 MHEYILKNWRLVKVATTKAQRKLFFNLRSHKTGLDAMTPDQVEALAKTLNVKREEVIEME 184 Query: 183 TRLSGRDVALEAPTDDDDDKFAPIAYLSSDNNEPTRVMEAKQYDRLQSEGLEAALSKLDD 242 TRLSGRD+ALEAPTDD+DDKFAPIAYLSSD+ EPTRV+E+++YDRLQ+EGL +AL KLD Sbjct: 185 TRLSGRDIALEAPTDDEDDKFAPIAYLSSDSQEPTRVLESQRYDRLQTEGLSSALGKLDP 244 Query: 243 RSRRIVEARWLANDDGSGATLHELADEFGVSAERIRQIEAVALKKMKGSLQAFA 296 RSRRIVEARWLANDDGSGATLHELA+EFGVSAERIRQIE VALKKMKGSL AFA Sbjct: 245 RSRRIVEARWLANDDGSGATLHELANEFGVSAERIRQIETVALKKMKGSLAAFA 298 >C3XCV3.1 C3XCV3_OXAFO RNA polymerase sigma factor Length = 299 Score = 459 bits (1181), Expect = e-127, Method: Compositional matrix adjust. Identities = 225/296 (76%), Positives = 253/296 (85%), Gaps = 1/296 (0%) Query: 2 KSATA-LMPVETNALALGFSGSLGNIDAYISAVNRLPMLTQAEEVSLARALREKNDLGAA 60 KSA A L+PV +ALA +GSLGNI+AYI+ +NRLPMLTQ E LA+ E NDL AA Sbjct: 4 KSAQASLLPVSRHALAPVLTGSLGNIEAYIAEINRLPMLTQERETELAQRYHENNDLAAA 63 Query: 61 QKLVLSHLRLVVSIARGYLGYGLPHADLIQEGNIGLMKAVKRFDPDQNVRLVSYAMHWIK 120 Q+LVLSHLRLV SIAR YLGYGLPHADLIQEGNIGLMKAVKRFDP VRLVSYA+HWIK Sbjct: 64 QELVLSHLRLVASIARNYLGYGLPHADLIQEGNIGLMKAVKRFDPKMGVRLVSYAIHWIK 123 Query: 121 AEMHEYILKNWRLVKVATTKAQRKLFFNLRSHKTGLDAMTPAQVDALAKTLDVKREEVIE 180 AE+HEYIL+NWR+VKVATTKAQRKLFFNLRSHK+G +AMT Q+ +LA+ L+VK EEV E Sbjct: 124 AEIHEYILRNWRMVKVATTKAQRKLFFNLRSHKSGNEAMTREQIRSLAEKLNVKDEEVSE 183 Query: 181 METRLSGRDVALEAPTDDDDDKFAPIAYLSSDNNEPTRVMEAKQYDRLQSEGLEAALSKL 240 METRLSG D+ALE DDDDD FAPIAYLSS+ EPTRV+EAKQ+DRLQSEGL AL KL Sbjct: 184 METRLSGHDIALETQHDDDDDNFAPIAYLSSEQTEPTRVLEAKQHDRLQSEGLAEALDKL 243 Query: 241 DDRSRRIVEARWLANDDGSGATLHELADEFGVSAERIRQIEAVALKKMKGSLQAFA 296 DDRS+RI+EARWL NDDGSGATLH+LA+EFGVSAERIRQIEA ALKKMK +L AF+ Sbjct: 244 DDRSKRIIEARWLKNDDGSGATLHDLAEEFGVSAERIRQIEAAALKKMKNTLAAFS 299