BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0514.p         (227 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8ITI6.1 D8ITI6_HERSS Signal recognition particle GTPase involve...   413   e-113
A4G931.1 A4G931_HERAR Cell division protein FtsY homolog              411   e-113
A6T2T2.1 A6T2T2_JANMA Signal recognition particle receptor            408   e-112
F1W1J3.1 F1W1J3_9BURK Signal recognition particle receptor prote...   385   e-105
Q2T1C5.1 Q2T1C5_BURTA Signal recognition particle-docking protei...   378   e-103

>D8ITI6.1 D8ITI6_HERSS Signal recognition particle GTPase involved in cell
           division protein
          Length = 321

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 203/227 (89%), Positives = 216/227 (95%)

Query: 1   VRQALRALLIEMLRPLQKPLVLGRHQPLVMMIAGVNGAGKTTTIGKLAKHLQAHDQSVLL 60
           VR ALR LLIE+L+PLQ+PLVLGR +PLVMMIAGVNGAGKTTTIGKLA HLQAH QSVLL
Sbjct: 95  VRTALRTLLIELLQPLQRPLVLGRDKPLVMMIAGVNGAGKTTTIGKLALHLQAHGQSVLL 154

Query: 61  AAGDTFRAAAREQLTIWGERNNITVISQESGDPAAVAYDAVHSATARGTNVVMVDTAGRL 120
           AAGDTFRAAAREQL +WGERNN+ VI+QESGDPAAVAYD+VHSA ARGT+VVMVDTAGRL
Sbjct: 155 AAGDTFRAAAREQLAVWGERNNVQVIAQESGDPAAVAYDSVHSAQARGTHVVMVDTAGRL 214

Query: 121 PTQLHLMDELKKIKRVIGKAMDTAPHEVLLVIDGNTGQNALAQVKAFDDALGLTGLVVTK 180
           PTQLHLMDELKKIKRVIGKAM +APHEVLLVIDGNTGQNALAQVKAFDDALGLTGLVVTK
Sbjct: 215 PTQLHLMDELKKIKRVIGKAMHSAPHEVLLVIDGNTGQNALAQVKAFDDALGLTGLVVTK 274

Query: 181 LDGTAKGGILAAIARTRPVPLYFIGVGESIDDLQAFDAEEFVDALLS 227
           LDGTAKGGILAAIA+TRPVPLYFIGVGE I+DLQAF+A EFVDALLS
Sbjct: 275 LDGTAKGGILAAIAKTRPVPLYFIGVGEQIEDLQAFNATEFVDALLS 321


>A4G931.1 A4G931_HERAR Cell division protein FtsY homolog
          Length = 408

 Score =  411 bits (1056), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 195/226 (86%), Positives = 214/226 (94%)

Query: 1   VRQALRALLIEMLRPLQKPLVLGRHQPLVMMIAGVNGAGKTTTIGKLAKHLQAHDQSVLL 60
           V+ ALR+LL+EML PLQKPLVLG+HQPLVMMI GVNGAGKTTTIGKLAKHLQAH QSVLL
Sbjct: 182 VKTALRSLLLEMLTPLQKPLVLGQHQPLVMMITGVNGAGKTTTIGKLAKHLQAHHQSVLL 241

Query: 61  AAGDTFRAAAREQLTIWGERNNITVISQESGDPAAVAYDAVHSATARGTNVVMVDTAGRL 120
           AAGDTFRAAAREQLT+WGERNN+TVI+QESGDPAAVA+DAVHSA ARGTNVVMVDTAGRL
Sbjct: 242 AAGDTFRAAAREQLTVWGERNNVTVIAQESGDPAAVAFDAVHSAQARGTNVVMVDTAGRL 301

Query: 121 PTQLHLMDELKKIKRVIGKAMDTAPHEVLLVIDGNTGQNALAQVKAFDDALGLTGLVVTK 180
           PTQLHLM+ELKKIKRVI K M +APHE+LL+IDGNTGQNAL QVKAFDDALGLTGLVVTK
Sbjct: 302 PTQLHLMEELKKIKRVIAKGMSSAPHEILLIIDGNTGQNALTQVKAFDDALGLTGLVVTK 361

Query: 181 LDGTAKGGILAAIARTRPVPLYFIGVGESIDDLQAFDAEEFVDALL 226
           LDGTAKGG+LAAIAR RP+P+YFIGVGE I+DLQ F+A+EFV+ALL
Sbjct: 362 LDGTAKGGVLAAIARARPIPVYFIGVGEQIEDLQPFNAQEFVEALL 407


>A6T2T2.1 A6T2T2_JANMA Signal recognition particle receptor
          Length = 419

 Score =  408 bits (1048), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 192/226 (84%), Positives = 215/226 (95%)

Query: 1   VRQALRALLIEMLRPLQKPLVLGRHQPLVMMIAGVNGAGKTTTIGKLAKHLQAHDQSVLL 60
           V+ ALR+LL+EML PLQKPLVLG+HQPLVMMI GVNGAGKTTTIGKLAKHLQAH+QSVLL
Sbjct: 193 VKTALRSLLLEMLTPLQKPLVLGQHQPLVMMITGVNGAGKTTTIGKLAKHLQAHNQSVLL 252

Query: 61  AAGDTFRAAAREQLTIWGERNNITVISQESGDPAAVAYDAVHSATARGTNVVMVDTAGRL 120
           AAGDTFRAAAREQLT+WG+RNN+TVI+QESGDPAAVA+DAVHSA ARGTNVVMVDTAGRL
Sbjct: 253 AAGDTFRAAAREQLTVWGQRNNVTVIAQESGDPAAVAFDAVHSAQARGTNVVMVDTAGRL 312

Query: 121 PTQLHLMDELKKIKRVIGKAMDTAPHEVLLVIDGNTGQNALAQVKAFDDALGLTGLVVTK 180
           PTQLHLM+ELKK+KRV+ K M +APHE+LL+IDGNTGQNAL QVKAFDDALGLTGLVVTK
Sbjct: 313 PTQLHLMEELKKVKRVMAKGMASAPHEILLIIDGNTGQNALTQVKAFDDALGLTGLVVTK 372

Query: 181 LDGTAKGGILAAIARTRPVPLYFIGVGESIDDLQAFDAEEFVDALL 226
           LDGTAKGG+LAAIAR RP+P+YFIGVGE I+DLQ F+A+EFV+ALL
Sbjct: 373 LDGTAKGGVLAAIARARPIPVYFIGVGEQIEDLQPFNAQEFVEALL 418


>F1W1J3.1 F1W1J3_9BURK Signal recognition particle receptor protein FtsY
           (Alpha subunit)
          Length = 220

 Score =  385 bits (988), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 187/215 (86%), Positives = 202/215 (93%)

Query: 12  MLRPLQKPLVLGRHQPLVMMIAGVNGAGKTTTIGKLAKHLQAHDQSVLLAAGDTFRAAAR 71
           ML PLQKPL LGRHQPLVMMI GVNGAGKTTTIGKLAKHLQA+ QSVLLAAGDTFRAAAR
Sbjct: 1   MLSPLQKPLELGRHQPLVMMITGVNGAGKTTTIGKLAKHLQANRQSVLLAAGDTFRAAAR 60

Query: 72  EQLTIWGERNNITVISQESGDPAAVAYDAVHSATARGTNVVMVDTAGRLPTQLHLMDELK 131
           EQLTIWGERNN+ VI+QESGDPAAVA+DAVHSA A+ TNVVM+DTAGRLPTQLHLM+ELK
Sbjct: 61  EQLTIWGERNNVAVIAQESGDPAAVAFDAVHSAMAKKTNVVMIDTAGRLPTQLHLMEELK 120

Query: 132 KIKRVIGKAMDTAPHEVLLVIDGNTGQNALAQVKAFDDALGLTGLVVTKLDGTAKGGILA 191
           KIKRVI KAM +APHE+LLVIDGNTGQNAL QVKAFDDALGLTGLVVTKLDGTAKGG+LA
Sbjct: 121 KIKRVIAKAMPSAPHEILLVIDGNTGQNALMQVKAFDDALGLTGLVVTKLDGTAKGGVLA 180

Query: 192 AIARTRPVPLYFIGVGESIDDLQAFDAEEFVDALL 226
           AIARTRP+P+YFIGVGE I+DLQ F+A+EFV ALL
Sbjct: 181 AIARTRPIPVYFIGVGEQIEDLQPFNADEFVTALL 215


>Q2T1C5.1 Q2T1C5_BURTA Signal recognition particle-docking protein FtsY
          Length = 433

 Score =  378 bits (971), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 183/226 (80%), Positives = 204/226 (90%)

Query: 1   VRQALRALLIEMLRPLQKPLVLGRHQPLVMMIAGVNGAGKTTTIGKLAKHLQAHDQSVLL 60
           V+ ALR LL+E+L PL++ LVLGR QPLVMMIAGVNGAGKTT+IGKLAKHLQ+ DQSVLL
Sbjct: 207 VKDALRGLLVELLTPLEQSLVLGRAQPLVMMIAGVNGAGKTTSIGKLAKHLQSFDQSVLL 266

Query: 61  AAGDTFRAAAREQLTIWGERNNITVISQESGDPAAVAYDAVHSATARGTNVVMVDTAGRL 120
           AAGDTFRAAAREQL IWGERNN+TV+ QESGDPAAV +DAV +A AR  +V+M DTAGRL
Sbjct: 267 AAGDTFRAAAREQLAIWGERNNVTVVQQESGDPAAVIFDAVSAARARNIDVMMADTAGRL 326

Query: 121 PTQLHLMDELKKIKRVIGKAMDTAPHEVLLVIDGNTGQNALAQVKAFDDALGLTGLVVTK 180
           PTQLHLM+EL+K+KRVIGKA D APHEVLLVID NTGQNALAQVKAFDDALGLTGL+VTK
Sbjct: 327 PTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQVKAFDDALGLTGLIVTK 386

Query: 181 LDGTAKGGILAAIARTRPVPLYFIGVGESIDDLQAFDAEEFVDALL 226
           LDGTAKGGILAAIAR RP+P+YFIGVGE ++DLQ F AEEF DALL
Sbjct: 387 LDGTAKGGILAAIARQRPIPVYFIGVGEKVEDLQPFSAEEFADALL 432