BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0462.p         (125 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8ISU9.1 D8ISU9_HERSS Stringent starvation B protein                  160   4e-38
A4G9H0.1 A4G9H0_HERAR Stringent starvation protein B                  158   2e-37
A6T360.1 A6T360_JANMA Stringent starvation protein B                  142   1e-32
F1VX66.1 F1VX66_9BURK ClpXP protease specificity-enhancing facto...   137   5e-31
C9Y885.1 C9Y885_9BURK Stringent starvation protein B                  118   3e-25

>D8ISU9.1 D8ISU9_HERSS Stringent starvation B protein
          Length = 165

 Score =  160 bits (406), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 92/129 (71%), Positives = 102/129 (79%), Gaps = 6/129 (4%)

Query: 1   MQFVKNGEIVLNISFEATSGLKMDNDFINFSARFGGVSRDISVPVENVIAIYARENGQGM 60
           MQFVKNGEIVLNISFEATSGLKM+ND I+FSARFGGVSRDI +PVENVIAIYARENGQGM
Sbjct: 39  MQFVKNGEIVLNISFEATSGLKMENDNIHFSARFGGVSRDILIPVENVIAIYARENGQGM 98

Query: 61  AFEAPAVLAVGDTE--DAPESAPGSVQAPGLASVPTA--NKANAGSKSAPDDEPEPPKKG 116
           AFEAPA       +  DAP+    S  AP L+SVP +   K +A S+   DD+PEPPKKG
Sbjct: 99  AFEAPAPATAEAVQESDAPQEPESS--APVLSSVPVSEPEKKSADSEEKGDDDPEPPKKG 156

Query: 117 GRPVLTRIK 125
           GRPVLTRIK
Sbjct: 157 GRPVLTRIK 165


>A4G9H0.1 A4G9H0_HERAR Stringent starvation protein B
          Length = 172

 Score =  158 bits (400), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 86/134 (64%), Positives = 95/134 (70%), Gaps = 9/134 (6%)

Query: 1   MQFVKNGEIVLNISFEATSGLKMDNDFINFSARFGGVSRDISVPVENVIAIYARENGQGM 60
           M+FVKNGEIVLNISF ATSGLKM+ND I FSARFGGVSRDISVPV+NV AIYARENGQGM
Sbjct: 39  MEFVKNGEIVLNISFSATSGLKMENDLIRFSARFGGVSRDISVPVDNVTAIYARENGQGM 98

Query: 61  AFE-------APAVLAVGDTEDAPESAPGSVQAPGLASVPTANKANAGSKSA--PDDEPE 111
           AFE       A AV  + D   A E    +  AP L SVPT +  +     A   D+EP+
Sbjct: 99  AFEAIDRNTDAQAVDELADDFSADEQGGTTSSAPMLTSVPTMHNQHGEKDGADHSDNEPD 158

Query: 112 PPKKGGRPVLTRIK 125
           PPKKGGRP LTRIK
Sbjct: 159 PPKKGGRPTLTRIK 172


>A6T360.1 A6T360_JANMA Stringent starvation protein B
          Length = 167

 Score =  142 bits (359), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 89/131 (67%), Positives = 97/131 (74%), Gaps = 8/131 (6%)

Query: 1   MQFVKNGEIVLNISFEATSGLKMDNDFINFSARFGGVSRDISVPVENVIAIYARENGQGM 60
           M+FVKNGEIVLNISF ATSGLKM+ND I FSARFGGVSRDISVPV+NV+AIYARENGQGM
Sbjct: 39  MEFVKNGEIVLNISFSATSGLKMENDLIRFSARFGGVSRDISVPVDNVVAIYARENGQGM 98

Query: 61  AFEAP---AVLAVGD-TEDAP--ESAPGSVQAPGLASVPTANKANAGSKSAPDDEPEPPK 114
           AFEA    A    GD  EDA   ++AP    AP L SVPTA         + DD P+PPK
Sbjct: 99  AFEATNKDATEEAGDEVEDASVEDTAPAHA-APALTSVPTAPHDKNDDDGS-DDVPDPPK 156

Query: 115 KGGRPVLTRIK 125
           KGGRP LTRIK
Sbjct: 157 KGGRPTLTRIK 167


>F1VX66.1 F1VX66_9BURK ClpXP protease specificity-enhancing factor /
           Stringent starvation protein B
          Length = 151

 Score =  137 bits (345), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 72/104 (69%), Positives = 80/104 (76%), Gaps = 9/104 (8%)

Query: 1   MQFVKNGEIVLNISFEATSGLKMDNDFINFSARFGGVSRDISVPVENVIAIYARENGQGM 60
           MQFVKNGEIVLNISF+ATS LKMDND + FSARFGGVSRDISVPVENVIAIYARENGQGM
Sbjct: 39  MQFVKNGEIVLNISFDATSALKMDNDLVRFSARFGGVSRDISVPVENVIAIYARENGQGM 98

Query: 61  AFEAP--------AVLAVGDTEDAPESAPGSVQAPGLASVPTAN 96
           AFE          AV+  GD++D P + P S   P L SVP+A+
Sbjct: 99  AFEVSRLPARDNDAVIESGDSQDEPVTDPVST-GPTLTSVPSAS 141


>C9Y885.1 C9Y885_9BURK Stringent starvation protein B
          Length = 159

 Score =  118 bits (296), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 67/126 (53%), Positives = 84/126 (66%), Gaps = 6/126 (4%)

Query: 1   MQFVKNGEIVLNISFEATSGLKMDNDFINFSARFGGVSRDISVPVENVIAIYARENGQGM 60
           M+FVK+GEIVLN+SF+ATS LK+ ND+I F  RFGGV+RDI VPV  V+AIYARENGQGM
Sbjct: 39  MEFVKDGEIVLNVSFDATSALKLGNDYIEFKGRFGGVARDILVPVTRVLAIYARENGQGM 98

Query: 61  AFEAPAVLAVGDTEDAPESAPGSVQAPG-LASVPTANKANAGSKSAPDDEPEPPKKGGRP 119
           AF   +V+   +++  P  A G   AP  LASV      + G+ +     P+P    GRP
Sbjct: 99  AFPVSSVMR-QESQSKPVDAEGERAAPPVLASVEAGIAEDDGTPTP----PKPASPAGRP 153

Query: 120 VLTRIK 125
            LTRIK
Sbjct: 154 ALTRIK 159