BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0447.p (569 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IZB9.1 D8IZB9_HERSS Methyl-accepting chemotaxis transducer tra... 631 e-178 F1W067.1 F1W067_9BURK Methyl-accepting chemotaxis protein I (Ser... 589 e-166 A6T427.1 A6T427_JANMA Methyl-accepting chemotaxis protein 461 e-127 A6SU26.1 A6SU26_JANMA Methyl-accepting chemotaxis protein 461 e-127 A6SWF3.1 A6SWF3_JANMA Methyl-accepting chemotaxis protein 452 e-125 >D8IZB9.1 D8IZB9_HERSS Methyl-accepting chemotaxis transducer transmembrane protein I Length = 547 Score = 631 bits (1627), Expect = e-178, Method: Compositional matrix adjust. Identities = 362/568 (63%), Positives = 441/568 (77%), Gaps = 21/568 (3%) Query: 1 MKNWKIGIRLTIGFGIVLALLVAGAMFGLRQVAKLNDRVEFITSVDEGKLLALSKVQFAV 60 MKN KIG RL +GF VL LLVA A FGL+QV++LNDR+ F+TSVDEGKL ALSKVQFAV Sbjct: 1 MKNLKIGHRLGLGFAAVLILLVAVAAFGLQQVSRLNDRIVFLTSVDEGKLEALSKVQFAV 60 Query: 61 GLRAIAARNLVLVTDPALQKSDIELVAKAQKDIDSGMAELTALMKNPADATAQERNMLEQ 120 GLRAIAARNL LV A QK+D++LV +Q+DID+GMAEL LM++PA ++ QER MLE+ Sbjct: 61 GLRAIAARNLTLVQSAADQKNDLDLVGSSQQDIDAGMAELGRLMQHPA-SSPQEREMLEK 119 Query: 121 LRALEAKYLPIATKIGALATTQQTEAAKAALVADCMPLLKQVIAHINEFNVVMRASTTES 180 LR LEA+YLP+A I LAT+QQTEAA+A+LV DCMP+L +VIA + +FN ++R ++ + Sbjct: 120 LRQLEAQYLPVAVNIVKLATSQQTEAARASLVKDCMPILNRVIAQVEQFNKLLRKNSEAN 179 Query: 181 VTAAQEAYEVSKWTMLTLSAVSLLLGSLIAWWLTRSISRPLKEAVTIAQNVSAGDLTSTI 240 V A+ AY ++KWTML S +L LG ++AW LTRSISRPL +AV++AQ+V +GDL S I Sbjct: 180 VEEAEAAYTLAKWTMLAASLAALTLGGMVAWLLTRSISRPLAQAVSVAQSVQSGDLGSRI 239 Query: 241 RVDSKDELGQLKLALKEMNDNLLRIVGDVRHGTDTIATASGEIASGNLDLSSRTEQQAGS 300 V SKDELGQL ALK MND+L+ IVG+VR GTDTIA AS EI GN+DLS+RTEQQAGS Sbjct: 240 EVTSKDELGQLMSALKGMNDSLVNIVGEVRQGTDTIAVASDEIKQGNMDLSNRTEQQAGS 299 Query: 301 LQETASAMEELTATVRQNAENAQQANKLATTASDIAVKGGAVVARVVETMASINESSKKV 360 LQETASAME+LTATV+QNA+NA++AN+LA AS +A +GGA V RVV+TM SI+ SS K+ Sbjct: 300 LQETASAMEQLTATVKQNADNAREANRLADNASQVAARGGAAVGRVVDTMNSISASSHKI 359 Query: 361 VDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLI 420 VDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA AAKEI+ LI Sbjct: 360 VDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAVAAKEIEALI 419 Query: 421 GTSVAKVDAGAALVDEAGATMGEILDSIQRVTGIVGDISSASDEQTRGIEQINQAITQMD 480 SVAKV G V EAG+TM E+++SI+ VT I+ DIS+AS EQT G+EQIN+A+ Q+D Sbjct: 420 NESVAKVVTGEKQVSEAGSTMHEVVESIKSVTHIMHDISAASAEQTSGLEQINRAVAQID 479 Query: 481 QVTQQNAALVEEAAAAAASMQSQTSSLAELVSVFKLDEQHMQYETAQAAPSIALKPGHHA 540 + TQQNAALVE+AAAAAASMQ Q+ +L E+VS+FKL AQ AP H Sbjct: 480 EATQQNAALVEQAAAAAASMQQQSVALTEVVSIFKLSR-------AQNAP-------QHL 525 Query: 541 VSAPATQVHHLPKPVSAPSLSMDHLSYA 568 SA VS P + M+ LSYA Sbjct: 526 RSAEREDA-----AVSGP-VHMEALSYA 547 >F1W067.1 F1W067_9BURK Methyl-accepting chemotaxis protein I (Serine chemoreceptor protein) Length = 578 Score = 589 bits (1519), Expect = e-166, Method: Compositional matrix adjust. Identities = 327/560 (58%), Positives = 413/560 (73%), Gaps = 14/560 (2%) Query: 1 MKNWKIGIRLTIGFGIVLALLVAGAMFGLRQVAKLNDRVEFITSVDEGKLLALSKVQFAV 60 MKN KIG RL + F ++L L + GL Q+ L++R+ FI V ++ L+ + AV Sbjct: 1 MKNLKIGSRLGMAFAVLLLLQLIVTGVGLYQIGGLSERMSFILDVANARIDVLNDIDSAV 60 Query: 61 GLRAIAARNLVLVTDPALQKSDIELVAKAQKDIDSGMAELTALMKNPADATAQERNMLEQ 120 RAIAARNL L+ DP+ Q++D+ LV ++Q ID G + L LMK+PA + + R MLE+ Sbjct: 61 SQRAIAARNLALLPDPSKQQADVTLVKESQVAIDKGFSRLAELMKDPAITSDKSRQMLEK 120 Query: 121 LRALEAKYLPIATKIGALATTQQTEAAKAALVADCMPLLKQVIAHINEFNVVMRASTTES 180 LR+LEA YLPIA + ALAT+Q+TE A + DCMP+L QV AHI F+ ++ T S Sbjct: 121 LRSLEATYLPIANNVVALATSQKTELAIKVITQDCMPVLLQVHAHIAAFDKSLKEETAVS 180 Query: 181 VTAAQEAYEVSKWTMLTLSAVSLLLGSLIAWWLTRSISRPLKEAVTIAQNVSAGDLTSTI 240 V AA+ A +++ W +L +SA SL+ G+L+ W + SI+ PL AV +A+ V+AGDLTS I Sbjct: 181 VNAAKTASQIAVWELLIISAFSLVAGALLGWRIKLSITVPLNAAVDVARRVAAGDLTSRI 240 Query: 241 RVDSKDELGQLKLALKEMNDNLLRIVGDVRHGTDTIATASGEIASGNLDLSSRTEQQAGS 300 V SKDE GQL ALK+MND+L IVG VR GTDTIATAS EIA+GN+DLSSRTEQQA S Sbjct: 241 EVTSKDETGQLLGALKDMNDSLTGIVGKVRQGTDTIATASAEIAAGNMDLSSRTEQQASS 300 Query: 301 LQETASAMEELTATVRQNAENAQQANKLATTASDIAVKGGAVVARVVETMASINESSKKV 360 L+ETAS+MEELT T +QNA+NA+QANKLA++AS++AVKGGAVV++VV TM SINES+KK+ Sbjct: 301 LEETASSMEELTGTSKQNADNARQANKLASSASEVAVKGGAVVSQVVSTMGSINESAKKI 360 Query: 361 VDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLI 420 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA+AAK+IK LI Sbjct: 361 ADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKDIKGLI 420 Query: 421 GTSVAKVDAGAALVDEAGATMGEILDSIQRVTGIVGDISSASDEQTRGIEQINQAITQMD 480 SV KVDAG LVD+AGA+M EI++S++RVT I+ +I++AS+EQT GIEQ+NQAI+QMD Sbjct: 421 NDSVEKVDAGTRLVDQAGASMSEIVESVRRVTDIISEIAAASEEQTAGIEQVNQAISQMD 480 Query: 481 QVTQQNAALVEEAAAAAASMQSQTSSLAELVSVFKLDEQHMQYETAQAAPSIALKPGHHA 540 +VTQQNAALVE+AAAAA S+Q Q+ +LA+ VS FKLD M G Sbjct: 481 EVTQQNAALVEQAAAAAESLQDQSGNLADTVSAFKLDNHGM--------------AGTAI 526 Query: 541 VSAPATQVHHLPKPVSAPSL 560 PA P PV PS+ Sbjct: 527 TRLPAGSAAGKPSPVKKPSV 546 >A6T427.1 A6T427_JANMA Methyl-accepting chemotaxis protein Length = 571 Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust. Identities = 280/551 (50%), Positives = 383/551 (69%), Gaps = 19/551 (3%) Query: 1 MKNWKIGIRLTIGFGIVLALLVAGAMFGLRQVAKLNDRVEFITSVDEGKLLALSKVQFAV 60 MKN KIG RL++ FG ++ LLV A ++ LND + + K + + ++ + Sbjct: 1 MKNLKIGQRLSLSFGSMVILLVVLATLAFTRIGGLNDAISEVDGDRYPKTVLANVMKDDL 60 Query: 61 GLRAIAARNLVLVTDPALQKSDIELVAKAQKDIDSGMAELTALMKNPADATAQERNMLEQ 120 A RN +L+T+ A ++++ + KA +++ + EL ++ + + R + Sbjct: 61 NQIARNMRNALLMTEKAAIQAELTQIGKATDSLNNALVELEKTVR-----SERGRQTIAG 115 Query: 121 LRALEAKYLPIATKIGALATTQQTEAAKAALVADCMPLLKQVIAHINEF----NVVMRAS 176 L+A +K+LP+ LA+ + A A L A+ P +A I++ N +M+ S Sbjct: 116 LQADRSKFLPLKDDFIKLASAGIKDEAVALLFAEVRPAQLSYLASIDKLIDYQNELMKKS 175 Query: 177 TTESVTAAQEAYEVSKWTMLTLSAVSLLLGSLIAWWLTRSISRPLKEAVTIAQNVSAGDL 236 E+ A + ++ + S +++L+ ++ A TRSI+RPL +AV +A+ V+ GDL Sbjct: 176 GAEANAKASQ----TQLLIGIFSIIAVLIAAVFAVLATRSITRPLSQAVVLARKVADGDL 231 Query: 237 TSTIRVDSKDELGQLKLALKEMNDNLLRIVGDVRHGTDTIATASGEIASGNLDLSSRTEQ 296 T +I V+SKDE GQL ALK+MN+ LL+IV VR GTDTIA+AS +IA+GNLDLSSRTEQ Sbjct: 232 TGSIVVESKDETGQLLQALKDMNEGLLKIVTQVRLGTDTIASASHQIATGNLDLSSRTEQ 291 Query: 297 QAGSLQETASAMEELTATVRQNAENAQQANKLATTASDIAVKGGAVVARVVETMASINES 356 QA SL+ETAS+MEELT+TV+QNAENA+Q+N+LA +AS++AV+GGAVV++VV+TM IN+S Sbjct: 292 QASSLEETASSMEELTSTVKQNAENARQSNQLALSASEVAVRGGAVVSKVVDTMGEINDS 351 Query: 357 SKKVVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEI 416 +KK+VDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSASAAKEI Sbjct: 352 AKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEI 411 Query: 417 KQLIGTSVAKVDAGAALVDEAGATMGEILDSIQRVTGIVGDISSASDEQTRGIEQINQAI 476 K+LIG SV KV G+ LVD+AGATM E+++S++RVT I+ +I++AS EQT GIEQINQA+ Sbjct: 412 KELIGDSVDKVSIGSRLVDDAGATMREVVESVKRVTDIMSEITAASQEQTDGIEQINQAV 471 Query: 477 TQMDQVTQQNAALVEEAAAAAASMQSQTSSLAELVSVFKLDEQH------MQYETAQAAP 530 QMDQVTQQNAALVEEAAAAA S+Q Q S L+++V VFKLD + TA P Sbjct: 472 MQMDQVTQQNAALVEEAAAAAESLQGQASHLSQVVGVFKLDGHGTTVVNAVPTYTAPEQP 531 Query: 531 SIALKPGHHAV 541 +A K H V Sbjct: 532 KVAGKAALHKV 542 >A6SU26.1 A6SU26_JANMA Methyl-accepting chemotaxis protein Length = 566 Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust. Identities = 289/556 (51%), Positives = 366/556 (65%), Gaps = 18/556 (3%) Query: 1 MKNWKIGIRLTIGFGIVLALLVAGAMFGLRQVAKLNDRVEFITSVDEGKLLALSKVQFAV 60 N KIG RL +GFG+VLAL +A A G+RQ+ ++ + + K +S +A Sbjct: 4 FSNMKIGARLMLGFGVVLALSIAIAADGIRQLHAVSAITRSMLELPIAKERMVS--DWAA 61 Query: 61 GLRAIAARNLVLVT--DPALQKSDIELVAKAQKDIDSGMAELTALMKNPADATAQERNML 118 +A AR + + DPAL + + A K + +L L+ T QE+ + Sbjct: 62 ITKASIARTIGVAKSADPALAQFSAKFAADDSKQSMEIIQKLEPLLN-----TDQEKELY 116 Query: 119 EQLRALEAKYLPIATKIGALATTQQTEAAKAALVADC--MPLLKQVIAHINEFNVVMRAS 176 ++ + +L A + G + + + A+AA D +P H EF + R Sbjct: 117 AKILDVRKSFL--AGREGVMKLKTEGKEAEAAKYFDTTFLPAADSFKNHFTEFVELERKQ 174 Query: 177 TTESVTAAQEAYEVSKWTMLTLSAVSLLLGSLIAWWLTRSISRPLKEAVTIAQNVSAGDL 236 + S ++ LSA+ L G AW LT I+RPLK AV A+ V+ GDL Sbjct: 175 MDAGTAQLSDVEAASTRQLMLLSAMVLAFGIFCAWRLTIGITRPLKTAVDAARRVAGGDL 234 Query: 237 TSTIRVDSKDELGQLKLALKEMNDNLLRIVGDVRHGTDTIATASGEIASGNLDLSSRTEQ 296 T+ I+ +SKDE GQL ALK+MND L RIVG+VR GT+TI TAS EIA+GNLDLSSRTEQ Sbjct: 235 TNDIKAESKDECGQLLAALKDMNDGLQRIVGEVRLGTETITTASNEIAAGNLDLSSRTEQ 294 Query: 297 QAGSLQETASAMEELTATVRQNAENAQQANKLATTASDIAVKGGAVVARVVETMASINES 356 QA SL+ETAS+MEELT+TV+QNA+NA+QAN+LA +AS++A+KGG VV++VV+TM+SINES Sbjct: 295 QASSLEETASSMEELTSTVKQNADNARQANQLAVSASEVALKGGDVVSQVVQTMSSINES 354 Query: 357 SKKVVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEI 416 S+K+VDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSASAAKEI Sbjct: 355 SRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSASAAKEI 414 Query: 417 KQLIGTSVAKVDAGAALVDEAGATMGEILDSIQRVTGIVGDISSASDEQTRGIEQINQAI 476 K LIG SV KVD G LV EAGATM EI++SI+RVT I+G+I++AS EQ+ GIEQINQAI Sbjct: 415 KALIGDSVGKVDTGNKLVAEAGATMDEIVNSIRRVTDIMGEITAASQEQSAGIEQINQAI 474 Query: 477 TQMDQVTQQNAALVEEAAAAAASMQSQTSSLAELVSVFKLDE-QHMQYETAQAAPSIALK 535 QMD VTQQNA+LVEEAAAAA SMQ Q L ++V FKLD Q A +A K Sbjct: 475 GQMDHVTQQNASLVEEAAAAAESMQDQARKLGQVVGAFKLDNAQEANPPRASGVTRLAPK 534 Query: 536 PGHH----AVSAPATQ 547 P AV+AP Q Sbjct: 535 PAAGSAGLAVAAPLPQ 550 >A6SWF3.1 A6SWF3_JANMA Methyl-accepting chemotaxis protein Length = 573 Score = 452 bits (1163), Expect = e-125, Method: Compositional matrix adjust. Identities = 282/532 (53%), Positives = 366/532 (68%), Gaps = 26/532 (4%) Query: 1 MKNWKIGIRLTIGFGIVLALLVAGAMFGLRQVAKLNDRVEFITSVDEGKLLALSKVQFAV 60 N KIG RLTIGF +VLAL+ A G+ + + R+ I + K+ L + +V Sbjct: 3 FSNLKIGTRLTIGFFLVLALMAALTACGVNGMQNIQKRLNTIIDDNVHKMNLLQDMSESV 62 Query: 61 GLRAIAARNLVLVTDPALQKSDIELVAKAQKDIDSGMAELTALMKNPADATAQERNMLEQ 120 + + + LVL+ + + +I+ V A+ D A + L K PA ER + E+ Sbjct: 63 HIVSHSMGTLVLMRNESEMVLEIKKVVDARSKYD---AAILVLEKKPALEV--ERVLREK 117 Query: 121 LRALEAKYLPIATKIGALATTQQTEAAKAALVADCMPL-------LKQVI---AHINEFN 170 ++ +A + +I A + E A A L+ PL L Q I H NE + Sbjct: 118 IKGAQADARVVNDQIIEFARGNKDEEASALLIKTAEPLNQAWQQALDQSIQLQKHANEAD 177 Query: 171 VVMRASTTESVTAAQEAYEVSKWTMLTLSAVSLLLGSLIAWWLTRSISRPLKEAVTIAQN 230 V AA YE S+ M LS V+L+LG +IAW +TRSISRP+ A+ +A Sbjct: 178 AV----------AATATYENSQLYMGALSGVALILGIVIAWVITRSISRPIISAMNVANT 227 Query: 231 VSAGDLTSTIRVDSKDELGQLKLALKEMNDNLLRIVGDVRHGTDTIATASGEIASGNLDL 290 V+ GDLTS I + + DE GQL ALK+MNDNL+ IV VRHGT+TIATAS EIA+GNLDL Sbjct: 228 VALGDLTSHIEITTADESGQLLHALKDMNDNLVSIVTQVRHGTETIATASAEIATGNLDL 287 Query: 291 SSRTEQQAGSLQETASAMEELTATVRQNAENAQQANKLATTASDIAVKGGAVVARVVETM 350 S+RTE+QA SL++TAS+MEELT+TV+ N +NA+QANKLA ASD A +GG VVA+VVETM Sbjct: 288 SARTEEQASSLEQTASSMEELTSTVKHNFDNARQANKLALNASDAASRGGVVVAQVVETM 347 Query: 351 ASINESSKKVVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA 410 IN SS+K+ DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRS+ Sbjct: 348 GFINGSSRKISDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSS 407 Query: 411 SAAKEIKQLIGTSVAKVDAGAALVDEAGATMGEILDSIQRVTGIVGDISSASDEQTRGIE 470 +AAK+I+ LIG+SV K+DAG+ LV+EAG TM EI+ S+Q+VT I+ +I++AS+EQ+ GIE Sbjct: 408 AAAKDIRILIGSSVQKIDAGSLLVEEAGRTMKEIVISVQQVTSIMAEITAASEEQSAGIE 467 Query: 471 QINQAITQMDQVTQQNAALVEEAAAAAASMQSQTSSLAELVSVFKLDE-QHM 521 Q+NQAI QMDQVTQQNAALVEEAAAAAAS++ Q +L+++V VFKLD QHM Sbjct: 468 QVNQAIAQMDQVTQQNAALVEEAAAAAASLREQAENLSKVVRVFKLDNTQHM 519