BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0440.p         (198 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A7MNE1.1 A7MNE1_ENTS8 Putative uncharacterized protein                158   5e-37
C9Y123.1 C9Y123_CROTZ Methyl-accepting chemotaxis protein II          145   4e-33
E3GD73.1 E3GD73_ENTCS Methyl-accepting chemotaxis sensory transd...   145   4e-33
E6W8Y4.1 E6W8Y4_PANSA Methyl-accepting chemotaxis sensory transd...   140   7e-32
D6YQC3.1 D6YQC3_PANVC Methyl-accepting chemotaxis protein I           131   5e-29

>A7MNE1.1 A7MNE1_ENTS8 Putative uncharacterized protein
          Length = 531

 Score =  158 bits (399), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 94/183 (51%), Positives = 123/183 (67%), Gaps = 2/183 (1%)

Query: 1   MKLTNLRIGTRLGLLAALLLLATIFVGVRGWMTLNESFEQNTQAMQKAGTIEKAIDSARS 60
           MKL +L IG RLGLLAALLL+A +F+G+RG     +  EQN   M     I ++ID+AR+
Sbjct: 1   MKLNHLTIGQRLGLLAALLLVAVLFIGIRGLTINADGLEQNNNIMATEKVIAESIDTARN 60

Query: 61  AQVQFKIQVQEWKNTLLRG-KDDATFNKYRQAFIDEGKATQINLDKLTTLLPALGISIDK 119
           AQVQFKIQVQEWKNTLLRG +  A F+KY+ AF+D+   TQ  L++L TLLP LG+ +D+
Sbjct: 61  AQVQFKIQVQEWKNTLLRGTQGQAAFDKYKAAFVDQSDKTQALLNRLATLLPQLGMGVDE 120

Query: 120 LKQAQKAHADLGAHYLAALQKEYKPEDRDSVARVDEAVKGADRLPTQMIDDIVAEVRKSA 179
           ++Q    H +L   YLAA+  +Y   D  S   VD+ V G DR PT+MIDD+VA+  K A
Sbjct: 121 VRQTIAKHEELEKSYLAAI-AQYNIADPTSAQHVDKLVSGIDREPTRMIDDVVAKTLKQA 179

Query: 180 DKF 182
           D  
Sbjct: 180 DAL 182


>C9Y123.1 C9Y123_CROTZ Methyl-accepting chemotaxis protein II
          Length = 504

 Score =  145 bits (365), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 76/156 (48%), Positives = 102/156 (65%), Gaps = 2/156 (1%)

Query: 28  VRGWMTLNESFEQNTQAMQKAGTIEKAIDSARSAQVQFKIQVQEWKNTLLRG-KDDATFN 86
           +RG     +  EQN   M     I ++ID+AR+AQVQFKIQVQEWKNTLLRG +  A F+
Sbjct: 1   MRGLTINADGLEQNNNIMATEKVIAESIDTARNAQVQFKIQVQEWKNTLLRGTQGQAAFD 60

Query: 87  KYRQAFIDEGKATQINLDKLTTLLPALGISIDKLKQAQKAHADLGAHYLAALQKEYKPED 146
           KY+ AF+D+   TQ  L++LTTLLP LG+++D+++Q    H  L   YLAA+  +Y   D
Sbjct: 61  KYKAAFVDQSDKTQALLNRLTTLLPQLGMNVDEVRQTIALHEGLEKSYLAAI-AQYNIAD 119

Query: 147 RDSVARVDEAVKGADRLPTQMIDDIVAEVRKSADKF 182
             S  RVD+ V G DR PT+MID++VA+  K AD  
Sbjct: 120 PTSAQRVDKLVSGIDREPTRMIDEVVAKTLKQADAL 155


>E3GD73.1 E3GD73_ENTCS Methyl-accepting chemotaxis sensory transducer
          Length = 526

 Score =  145 bits (365), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 91/186 (48%), Positives = 120/186 (64%), Gaps = 2/186 (1%)

Query: 1   MKLTNLRIGTRLGLLAALLLLATIFVGVRGWMTLNESFEQNTQAMQKAGTIEKAIDSARS 60
           MKL  L IG RLGL+A LLLLA +F+G+RG +  + SF QN   M     +  +ID+AR+
Sbjct: 1   MKLNQLTIGQRLGLMATLLLLAMLFIGLRGLVINSNSFSQNQAMMASEKRLADSIDTARN 60

Query: 61  AQVQFKIQVQEWKNTLLR-GKDDATFNKYRQAFIDEGKATQINLDKLTTLLPALGISIDK 119
           AQVQFKIQVQEWKNTLLR G+    F KY+ AFI + + TQ  L +L+ LLP LG+    
Sbjct: 61  AQVQFKIQVQEWKNTLLRGGQGQEAFEKYKAAFISQSQKTQQLLKQLSDLLPQLGLDNRA 120

Query: 120 LKQAQKAHADLGAHYLAALQKEYKPEDRDSVARVDEAVKGADRLPTQMIDDIVAEVRKSA 179
           ++Q ++ HA L   YLAALQ +Y   D  S  RVD  V G DR PT+MID++VA   + A
Sbjct: 121 VEQTRQLHAGLEQRYLAALQ-QYVITDPGSPQRVDHLVTGIDREPTRMIDEVVARTLQHA 179

Query: 180 DKFREE 185
           +   ++
Sbjct: 180 EAIHQQ 185


>E6W8Y4.1 E6W8Y4_PANSA Methyl-accepting chemotaxis sensory transducer
          Length = 526

 Score =  140 bits (354), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 94/188 (50%), Positives = 119/188 (63%), Gaps = 2/188 (1%)

Query: 1   MKLTNLRIGTRLGLLAALLLLATIFVGVRGWMTLNESFEQNTQAMQKAGTIEKAIDSARS 60
           MKL + +IG RLG LA LLLLAT+ +G+RG      +   N + M +   I ++ID+ARS
Sbjct: 1   MKLNHFKIGQRLGFLATLLLLATLLMGLRGLQVNLLALNNNQEVMAQEVLIAESIDTARS 60

Query: 61  AQVQFKIQVQEWKNTLLRGKDDA-TFNKYRQAFIDEGKATQINLDKLTTLLPALGISIDK 119
           AQVQFKIQVQEWKNTLLRG     TFNKY+ AF+ E K TQ  L KL+ +  +LG+    
Sbjct: 61  AQVQFKIQVQEWKNTLLRGNQGQDTFNKYKAAFLQESKTTQALLTKLSQIQTSLGLPTGP 120

Query: 120 LKQAQKAHADLGAHYLAALQKEYKPEDRDSVARVDEAVKGADRLPTQMIDDIVAEVRKSA 179
           ++QA+  HA L + YLAAL   Y   D  S ARVD  V G DR PTQ IDD+VA   + A
Sbjct: 121 VEQARSVHAGLESKYLAAL-DNYVISDITSAARVDHLVTGIDRAPTQQIDDLVATTLQRA 179

Query: 180 DKFREEIA 187
            +  + IA
Sbjct: 180 QQMHQAIA 187


>D6YQC3.1 D6YQC3_PANVC Methyl-accepting chemotaxis protein I
          Length = 576

 Score =  131 bits (330), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 89/188 (47%), Positives = 119/188 (63%), Gaps = 4/188 (2%)

Query: 1   MKLTNLRIGTRLGLLAALLLLATIFVGVRGWMTLN-ESFEQNTQAMQKAGTIEKAIDSAR 59
           MKL +  IG RL ++AA+LLLAT+ VG+RG +TLN ++ ++NT  M     + ++ID+AR
Sbjct: 50  MKLNHFTIGQRLSVMAAILLLATLLVGLRG-ITLNTQALQKNTDIMASETRVAESIDTAR 108

Query: 60  SAQVQFKIQVQEWKNTLLRG-KDDATFNKYRQAFIDEGKATQINLDKLTTLLPALGISID 118
           +AQVQFKIQVQEWKNTLLRG K    F KY+ AF+ +   TQ  L +L  L P LG+   
Sbjct: 109 NAQVQFKIQVQEWKNTLLRGTKGMRVFEKYKAAFLAQSDKTQALLHQLLILQPELGMDTT 168

Query: 119 KLKQAQKAHADLGAHYLAALQKEYKPEDRDSVARVDEAVKGADRLPTQMIDDIVAEVRKS 178
           ++KQ  + HA L   YL ALQ  Y  ++  S   VD  V G DR PT+MIDD+V      
Sbjct: 169 QVKQTIELHAQLRQKYLVALQN-YDIQNLASAQLVDGQVNGIDREPTKMIDDVVHRTLAH 227

Query: 179 ADKFREEI 186
           A K  E++
Sbjct: 228 AQKLNEQM 235