BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0427.p (385 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q1BYE6.1 Q1BYE6_BURCA Phage integrase 523 e-146 A0K5A2.1 A0K5A2_BURCH Phage integrase family protein 523 e-146 A3NCI9.1 A3NCI9_BURP6 Phage integrase 522 e-146 F0G3L8.1 F0G3L8_9BURK Phage integrase family protein 517 e-144 B9BAQ1.1 B9BAQ1_9BURK Phage integrase 268 1e-69 >Q1BYE6.1 Q1BYE6_BURCA Phage integrase Length = 381 Score = 523 bits (1347), Expect = e-146, Method: Compositional matrix adjust. Identities = 243/377 (64%), Positives = 305/377 (80%) Query: 1 MGISKRSNSSNWYYQFQVRGKKYLGSTGTANRTKALQVERELRTKIHAELFLGQAETITL 60 M + +R+NS NWYYQFQ++GKK+ GSTGT N+TKA QVERE+R + HAE +LG A+ ITL Sbjct: 1 MTLIRRNNSKNWYYQFQIQGKKFFGSTGTPNKTKAAQVEREMRNRAHAEQYLGDAQPITL 60 Query: 61 EAALKLYLDARKTIPYHSGMLAISRKLAGYKLHPKTKEKIPCYGLSQNIHLHELQTRDIE 120 + AL+ Y++AR YH M +I RK GYKLHP+TK K+PCYG+S + LHEL TR + Sbjct: 61 KDALEQYVEARSETSYHRNMCSIVRKTLGYKLHPRTKAKLPCYGMSPDTLLHELTTRYFD 120 Query: 121 RLVQRRKAEGDAPATMKHEVGLIRSTMKEMIKLGYRVNREIIFPTFKTTSRLRYLDEAEE 180 LV +RKAEGD PAT+KHE+GL+R+T+ EM KLG++V+REI+FP +T+ RLRYLD +E Sbjct: 121 LLVAKRKAEGDKPATIKHEIGLLRATINEMAKLGFKVSREIVFPELRTSYRLRYLDSNDE 180 Query: 181 AALLRELNPETLRDGLKSLETRNSEMQRNMQDNYDIVVALLDTGCRYSEIANIPWSAVDV 240 +ALLREL+PE LR + + + + EM RNMQDNYDI V LLDTGCRYSE+AN PWSA+++ Sbjct: 181 SALLRELDPERLRARINASKPQTPEMTRNMQDNYDITVFLLDTGCRYSEVANTPWSAINL 240 Query: 241 EAGTIHVYRSKVSNEDHLHMTARLREIFRRRHANKKPDGRYVFENKQGNERGYSTQAIKK 300 +A TI +YRSKV NED LHMT+RL I RRR ++ RYVFE++ GNERGYST++IKK Sbjct: 241 DACTISLYRSKVRNEDVLHMTSRLEAILRRRWEERRTGQRYVFEDRTGNERGYSTKSIKK 300 Query: 301 AIDRAGLNAPDVVKEKGGKVTAHVLRHSYASKLVKHGVSLFEVSVLLGHSDPKMTQRYAH 360 AI+RAGLN P +VKE+GG+VT H LRH++ASKLVK GVSL+EVSVLLGHSDPKMTQRYAH Sbjct: 301 AIERAGLNDPVLVKERGGRVTLHTLRHTFASKLVKAGVSLYEVSVLLGHSDPKMTQRYAH 360 Query: 361 LAPNDASRKAVGIIDSI 377 L+PNDASRKAV IIDS+ Sbjct: 361 LSPNDASRKAVKIIDSL 377 >A0K5A2.1 A0K5A2_BURCH Phage integrase family protein Length = 381 Score = 523 bits (1347), Expect = e-146, Method: Compositional matrix adjust. Identities = 243/377 (64%), Positives = 305/377 (80%) Query: 1 MGISKRSNSSNWYYQFQVRGKKYLGSTGTANRTKALQVERELRTKIHAELFLGQAETITL 60 M + +R+NS NWYYQFQ++GKK+ GSTGT N+TKA QVERE+R + HAE +LG A+ ITL Sbjct: 1 MTLIRRNNSKNWYYQFQIQGKKFFGSTGTPNKTKAAQVEREMRNRAHAEQYLGDAQPITL 60 Query: 61 EAALKLYLDARKTIPYHSGMLAISRKLAGYKLHPKTKEKIPCYGLSQNIHLHELQTRDIE 120 + AL+ Y++AR YH M +I RK GYKLHP+TK K+PCYG+S + LHEL TR + Sbjct: 61 KDALEQYVEARSETSYHRNMCSIVRKTLGYKLHPRTKAKLPCYGMSPDTLLHELTTRYFD 120 Query: 121 RLVQRRKAEGDAPATMKHEVGLIRSTMKEMIKLGYRVNREIIFPTFKTTSRLRYLDEAEE 180 LV +RKAEGD PAT+KHE+GL+R+T+ EM KLG++V+REI+FP +T+ RLRYLD +E Sbjct: 121 LLVAKRKAEGDKPATIKHEIGLLRATINEMAKLGFKVSREIVFPELRTSYRLRYLDSNDE 180 Query: 181 AALLRELNPETLRDGLKSLETRNSEMQRNMQDNYDIVVALLDTGCRYSEIANIPWSAVDV 240 +ALLREL+PE LR + + + + EM RNMQDNYDI V LLDTGCRYSE+AN PWSA+++ Sbjct: 181 SALLRELDPERLRARINASKPQTPEMTRNMQDNYDITVFLLDTGCRYSEVANTPWSAINL 240 Query: 241 EAGTIHVYRSKVSNEDHLHMTARLREIFRRRHANKKPDGRYVFENKQGNERGYSTQAIKK 300 +A TI +YRSKV NED LHMT+RL I RRR ++ RYVFE++ GNERGYST++IKK Sbjct: 241 DACTISLYRSKVRNEDVLHMTSRLEAILRRRWEERRTGQRYVFEDRTGNERGYSTKSIKK 300 Query: 301 AIDRAGLNAPDVVKEKGGKVTAHVLRHSYASKLVKHGVSLFEVSVLLGHSDPKMTQRYAH 360 AI+RAGLN P +VKE+GG+VT H LRH++ASKLVK GVSL+EVSVLLGHSDPKMTQRYAH Sbjct: 301 AIERAGLNDPVLVKERGGRVTLHTLRHTFASKLVKAGVSLYEVSVLLGHSDPKMTQRYAH 360 Query: 361 LAPNDASRKAVGIIDSI 377 L+PNDASRKAV IIDS+ Sbjct: 361 LSPNDASRKAVKIIDSL 377 >A3NCI9.1 A3NCI9_BURP6 Phage integrase Length = 381 Score = 522 bits (1344), Expect = e-146, Method: Compositional matrix adjust. Identities = 241/377 (63%), Positives = 304/377 (80%) Query: 1 MGISKRSNSSNWYYQFQVRGKKYLGSTGTANRTKALQVERELRTKIHAELFLGQAETITL 60 M + +R+NS NWYYQFQ++GKK+ GSTGT N+TKA QVERE+R + HAE +LG A+ ITL Sbjct: 1 MTLIRRNNSKNWYYQFQIQGKKFFGSTGTPNKTKAAQVEREMRNRAHAEQYLGDAQPITL 60 Query: 61 EAALKLYLDARKTIPYHSGMLAISRKLAGYKLHPKTKEKIPCYGLSQNIHLHELQTRDIE 120 + AL+ Y++AR YH M +I RK GYKLHP+TK K+PCYG+ + LHEL TRD + Sbjct: 61 KDALEQYVEARSDTSYHRNMCSIVRKTLGYKLHPRTKAKLPCYGMLPDTLLHELTTRDFD 120 Query: 121 RLVQRRKAEGDAPATMKHEVGLIRSTMKEMIKLGYRVNREIIFPTFKTTSRLRYLDEAEE 180 L +RKAEGD PAT+KHE+GL+R+T+ EM KLG++V+REI+FP +T+ RLRYLD +E Sbjct: 121 LLAAKRKAEGDKPATIKHEIGLLRATINEMAKLGFKVSREIVFPELRTSYRLRYLDSNDE 180 Query: 181 AALLRELNPETLRDGLKSLETRNSEMQRNMQDNYDIVVALLDTGCRYSEIANIPWSAVDV 240 +ALLREL+PE LR + + + + EM RNMQDNYDI V LLDTGCRYSE+ANIPWSA+++ Sbjct: 181 SALLRELDPERLRARINASKPQTPEMTRNMQDNYDITVFLLDTGCRYSEVANIPWSAINL 240 Query: 241 EAGTIHVYRSKVSNEDHLHMTARLREIFRRRHANKKPDGRYVFENKQGNERGYSTQAIKK 300 + TI +YRSKV NED LHMT+RL I RRR ++ RYVFE++ GNERGYST++IKK Sbjct: 241 DTCTISLYRSKVRNEDVLHMTSRLEAILRRRWEERRTGQRYVFEDRTGNERGYSTKSIKK 300 Query: 301 AIDRAGLNAPDVVKEKGGKVTAHVLRHSYASKLVKHGVSLFEVSVLLGHSDPKMTQRYAH 360 AI+RAGLN P +VKE+GG+VT H LRH++ASKLVK GVSL+EVSVLLGHSDPKMTQRYAH Sbjct: 301 AIERAGLNDPVLVKERGGRVTLHTLRHTFASKLVKAGVSLYEVSVLLGHSDPKMTQRYAH 360 Query: 361 LAPNDASRKAVGIIDSI 377 L+PNDASRKAV +IDS+ Sbjct: 361 LSPNDASRKAVKVIDSL 377 >F0G3L8.1 F0G3L8_9BURK Phage integrase family protein Length = 381 Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust. Identities = 240/377 (63%), Positives = 301/377 (79%) Query: 1 MGISKRSNSSNWYYQFQVRGKKYLGSTGTANRTKALQVERELRTKIHAELFLGQAETITL 60 M + +R+NS NWYYQFQ++GKK+ GSTGT N+TKA QVERE+R + HAE +LG ITL Sbjct: 1 MTLIRRNNSKNWYYQFQIQGKKFFGSTGTPNKTKAAQVEREMRNRAHAEQYLGDTPPITL 60 Query: 61 EAALKLYLDARKTIPYHSGMLAISRKLAGYKLHPKTKEKIPCYGLSQNIHLHELQTRDIE 120 + AL+ Y++AR YH M +I RK GYKLHP+TK K+PCYG+S + LHEL TR + Sbjct: 61 KDALEEYVEARSDTSYHRNMCSIVRKTLGYKLHPRTKAKLPCYGMSPDTLLHELTTRGFD 120 Query: 121 RLVQRRKAEGDAPATMKHEVGLIRSTMKEMIKLGYRVNREIIFPTFKTTSRLRYLDEAEE 180 LV +RKAEGD AT+KHE+GL+R+T+ EM KLG++V+R+I+FP +T+ RLRYLD +E Sbjct: 121 LLVAKRKAEGDKAATIKHEIGLLRATINEMAKLGFKVSRDIVFPELRTSYRLRYLDSNDE 180 Query: 181 AALLRELNPETLRDGLKSLETRNSEMQRNMQDNYDIVVALLDTGCRYSEIANIPWSAVDV 240 +ALLREL+PE LR + + EM RNMQDNYDI V LLDTGCRYSE+ANIPWSA+++ Sbjct: 181 SALLRELDPERLRTRINPSKPLTPEMTRNMQDNYDITVFLLDTGCRYSEVANIPWSAINI 240 Query: 241 EAGTIHVYRSKVSNEDHLHMTARLREIFRRRHANKKPDGRYVFENKQGNERGYSTQAIKK 300 +A TI +YRSKV NED LHMT+RL I RRR ++ RYVFE++ GNERGYST++IKK Sbjct: 241 DASTISLYRSKVRNEDVLHMTSRLETILRRRWEERRTGQRYVFEDRTGNERGYSTKSIKK 300 Query: 301 AIDRAGLNAPDVVKEKGGKVTAHVLRHSYASKLVKHGVSLFEVSVLLGHSDPKMTQRYAH 360 AI+RAGLN P +VKE+GG+VT H LRH++ASKLVK GVSL+EVSVLLGHSDPKMTQRYAH Sbjct: 301 AIERAGLNDPALVKERGGRVTLHTLRHTFASKLVKAGVSLYEVSVLLGHSDPKMTQRYAH 360 Query: 361 LAPNDASRKAVGIIDSI 377 L+PNDASRKAV +IDS+ Sbjct: 361 LSPNDASRKAVKVIDSL 377 >B9BAQ1.1 B9BAQ1_9BURK Phage integrase Length = 173 Score = 268 bits (684), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 123/168 (73%), Positives = 146/168 (86%) Query: 210 MQDNYDIVVALLDTGCRYSEIANIPWSAVDVEAGTIHVYRSKVSNEDHLHMTARLREIFR 269 MQDNYDI V LLDTGCRYSE+ANIPWSA++++A TI +YRSKV NED LHMT+RL I R Sbjct: 1 MQDNYDITVFLLDTGCRYSEVANIPWSAINIDASTISLYRSKVRNEDVLHMTSRLEAILR 60 Query: 270 RRHANKKPDGRYVFENKQGNERGYSTQAIKKAIDRAGLNAPDVVKEKGGKVTAHVLRHSY 329 RR ++ RYVFE++ GNERGYST++IKKAI+RAGLN P +VKE+GG+VT H LRH++ Sbjct: 61 RRWEERRTGQRYVFEDRTGNERGYSTKSIKKAIERAGLNDPTLVKERGGRVTLHTLRHTF 120 Query: 330 ASKLVKHGVSLFEVSVLLGHSDPKMTQRYAHLAPNDASRKAVGIIDSI 377 ASKLVK GVSL+EVSVLLGHSDPKMTQRYAHL+PNDASRKAV +IDS+ Sbjct: 121 ASKLVKAGVSLYEVSVLLGHSDPKMTQRYAHLSPNDASRKAVKVIDSL 168