BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0392.p (268 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B5SJN8.1 B5SJN8_RALSO Cog3713, mipa like outer membrane protein v 170 2e-40 B5RX23.1 B5RX23_RALSO Cog3713, mipa like outer membrane protein v 169 3e-40 D8N4N4.1 D8N4N4_RALSO Putative uncharacterized protein 169 3e-40 D8NM72.1 D8NM72_RALSO Putative uncharacterized protein 168 6e-40 Q8XUW8.1 Q8XUW8_RALSO Probable cog3713, mipa like outer membrane... 167 2e-39 >B5SJN8.1 B5SJN8_RALSO Cog3713, mipa like outer membrane protein v Length = 261 Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 105/262 (40%), Positives = 138/262 (52%), Gaps = 12/262 (4%) Query: 17 RRRVAIPA---------SAQQTAAAGSETKITLGLGAAYMPRYAGSDEYKAIALPVISVV 67 R+R++I S Q AA E+ +L L A PRY GS +Y +P Sbjct: 2 RKRLSISCLALLPGIWLSPSQVLAA--ESSYSLSLNAGVTPRYQGSKQYTVTVMPGFRAE 59 Query: 68 TPWGGFIDAGEG-IGYRHGFGDKFIASAALGYDAGRKDSNQSLKPGSDKLRGMGEVKGAT 126 G FID G GY F + ASAA+ YD GR D N+ +PGSD LRGMG VKG+ Sbjct: 60 FGNGFFIDPTRGGAGYAMRFANGMFASAAVSYDPGRADENRYGRPGSDDLRGMGSVKGSL 119 Query: 127 LLNLSLGYRLTQNLTLSAGASQPLSNRDRGRNYYAKVDATVMTMPRDKLAVAGSALFGSN 186 L ++G R+ T SA P+SNRDRG + + V A V + +K+ V+ S FGS Sbjct: 120 LGAFTVGGRIVGETTASATLEVPISNRDRGWSAHVDVAAPVYSWGANKITVSPSLYFGSR 179 Query: 187 DYNQSYFGVTANQSATSGYKKYTPGSGLYAVKAAITWTHRFDDNWSLLAATEATRYMTKA 246 Y Q+YFGVT Q+A SG+ YT SGL A + W H F NW++ AA TR + A Sbjct: 180 KYMQTYFGVTPQQAADSGFAPYTADSGLQAASLTVAWKHTFSRNWAMQAAVGTTRLLGNA 239 Query: 247 GDSPIVKARTNYGTMAAVNYTF 268 SPIV+ + +Y + YTF Sbjct: 240 AKSPIVQNKQSYFGGTGIVYTF 261 >B5RX23.1 B5RX23_RALSO Cog3713, mipa like outer membrane protein v Length = 261 Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 105/262 (40%), Positives = 138/262 (52%), Gaps = 12/262 (4%) Query: 17 RRRVAIPA---------SAQQTAAAGSETKITLGLGAAYMPRYAGSDEYKAIALPVISVV 67 R+R++I S Q AA E+ +L L A PRY GS +Y +P Sbjct: 2 RKRLSISCLALLPGIWLSPSQVLAA--ESSYSLSLNAGVTPRYQGSKQYTVTVMPGFRAE 59 Query: 68 TPWGGFIDAGEG-IGYRHGFGDKFIASAALGYDAGRKDSNQSLKPGSDKLRGMGEVKGAT 126 G FID G GY F + ASAA+ YD GR D N+ +PGSD LRGMG VKG+ Sbjct: 60 FGNGFFIDPTRGGAGYAMRFANGMFASAAVSYDPGRADENRYGRPGSDDLRGMGSVKGSL 119 Query: 127 LLNLSLGYRLTQNLTLSAGASQPLSNRDRGRNYYAKVDATVMTMPRDKLAVAGSALFGSN 186 L ++G R+ T SA P+SNRDRG + + V A V + +K+ V+ S FGS Sbjct: 120 LGAFTVGGRIVGETTASATLEVPISNRDRGWSAHLDVAAPVYSWGANKITVSPSLYFGSR 179 Query: 187 DYNQSYFGVTANQSATSGYKKYTPGSGLYAVKAAITWTHRFDDNWSLLAATEATRYMTKA 246 Y Q+YFGVT Q+A SG+ YT SGL A + W H F NW++ AA TR + A Sbjct: 180 KYMQTYFGVTPQQAADSGFAPYTADSGLQAASLTVAWKHTFSRNWAMQAAVGTTRLLGNA 239 Query: 247 GDSPIVKARTNYGTMAAVNYTF 268 SPIV+ + +Y + YTF Sbjct: 240 AKSPIVQNKQSYFGGTGIVYTF 261 >D8N4N4.1 D8N4N4_RALSO Putative uncharacterized protein Length = 261 Score = 169 bits (428), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 97/236 (41%), Positives = 126/236 (53%), Gaps = 1/236 (0%) Query: 34 SETKITLGLGAAYMPRYAGSDEYKAIALPVISVVTPWGGFIDAGEG-IGYRHGFGDKFIA 92 +E ++ L A MPRY GS Y A +P G FID G GY F + A Sbjct: 26 AEPSYSVSLNAGVMPRYQGSKHYTATVMPGFRADFGNGFFIDPTRGGAGYNMRFANGMFA 85 Query: 93 SAALGYDAGRKDSNQSLKPGSDKLRGMGEVKGATLLNLSLGYRLTQNLTLSAGASQPLSN 152 SAA+ YD GR D N+ +PGSD LRGMG +KG+ L ++G R+ T SA P+SN Sbjct: 86 SAAVSYDPGRADENRYGRPGSDDLRGMGNIKGSLLGVFTVGSRIVGETTASATLELPISN 145 Query: 153 RDRGRNYYAKVDATVMTMPRDKLAVAGSALFGSNDYNQSYFGVTANQSATSGYKKYTPGS 212 RDRG + + + A V + DK+ V+ S FGS Y Q+YFGVT QSA SG+ YT S Sbjct: 146 RDRGWSAHVDLAAPVYSQGADKITVSPSLHFGSRKYMQTYFGVTPQQSADSGFAPYTADS 205 Query: 213 GLYAVKAAITWTHRFDDNWSLLAATEATRYMTKAGDSPIVKARTNYGTMAAVNYTF 268 GL A + W H F W++ A TR + A SPIV+ + Y + YTF Sbjct: 206 GLQAASLTVAWKHTFSRQWAVQTAVGTTRLLGNAAKSPIVQNKQGYFAGTGIVYTF 261 >D8NM72.1 D8NM72_RALSO Putative uncharacterized protein Length = 261 Score = 168 bits (426), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 104/262 (39%), Positives = 139/262 (53%), Gaps = 12/262 (4%) Query: 17 RRRVAIPA---------SAQQTAAAGSETKITLGLGAAYMPRYAGSDEYKAIALPVISVV 67 R+R++I S Q AA E+ +L L A PRY GS +Y +P + Sbjct: 2 RKRLSISCLALLPGIWLSPSQVLAA--ESSYSLSLNAGVAPRYQGSKQYAVTVMPGLRAE 59 Query: 68 TPWGGFIDAGEG-IGYRHGFGDKFIASAALGYDAGRKDSNQSLKPGSDKLRGMGEVKGAT 126 G FID G GY F + ASAA+ YD GR D ++ +PGSD LRGMG VKG+ Sbjct: 60 FGNGFFIDPTRGGAGYAMHFANGMFASAAVSYDPGRADESRYGRPGSDDLRGMGSVKGSL 119 Query: 127 LLNLSLGYRLTQNLTLSAGASQPLSNRDRGRNYYAKVDATVMTMPRDKLAVAGSALFGSN 186 L ++G R+ T SA P+SNRDRG + + V A V + +K+ V+ S FGS Sbjct: 120 LGAFTVGGRIVGETTASATLEVPISNRDRGWSAHVDVAAPVYSWGANKITVSPSLSFGSR 179 Query: 187 DYNQSYFGVTANQSATSGYKKYTPGSGLYAVKAAITWTHRFDDNWSLLAATEATRYMTKA 246 Y Q+YFGVT Q+A SG+ YT SGL A + W H F NW++ AA TR + A Sbjct: 180 KYMQTYFGVTPQQAADSGFAPYTADSGLQAASLTVAWKHTFSRNWAMQAAVGTTRLLGNA 239 Query: 247 GDSPIVKARTNYGTMAAVNYTF 268 SPIV+ + +Y + YTF Sbjct: 240 AKSPIVQNKQSYFGGTGIVYTF 261 >Q8XUW8.1 Q8XUW8_RALSO Probable cog3713, mipa like outer membrane v transmembrane protein Length = 261 Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 95/231 (41%), Positives = 125/231 (54%), Gaps = 1/231 (0%) Query: 39 TLGLGAAYMPRYAGSDEYKAIALPVISVVTPWGGFIDAGEG-IGYRHGFGDKFIASAALG 97 ++ L A MPRY GS Y A +P G FID G GY F + ASAA+ Sbjct: 31 SVSLNAGVMPRYQGSKHYTATVMPGFRADFGNGFFIDPTRGGAGYNMRFANGMFASAAVS 90 Query: 98 YDAGRKDSNQSLKPGSDKLRGMGEVKGATLLNLSLGYRLTQNLTLSAGASQPLSNRDRGR 157 YD GR D N+ +PGSD LRGMG +KG+ L L++G R+ T SA P+SNRDRG Sbjct: 91 YDPGRADENRYGRPGSDDLRGMGNIKGSFLGVLTVGSRIVGETTASATLELPISNRDRGW 150 Query: 158 NYYAKVDATVMTMPRDKLAVAGSALFGSNDYNQSYFGVTANQSATSGYKKYTPGSGLYAV 217 + + + A + + DK+ V+ S FGS Y Q+YFGVT Q+A SG+ YT SGL A Sbjct: 151 SAHVDLAAPIYSQGADKITVSPSLHFGSRKYMQTYFGVTPQQAADSGFAPYTADSGLQAA 210 Query: 218 KAAITWTHRFDDNWSLLAATEATRYMTKAGDSPIVKARTNYGTMAAVNYTF 268 + W H F W++ A TR + A SPIV+ + Y + YTF Sbjct: 211 SLTVAWKHTFSRQWAVQTAVGTTRLLGNAAKSPIVQNKQGYFAGTGIVYTF 261