BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0390.p         (105 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A4JDJ3.1 A4JDJ3_BURVG Two component transcriptional regulator, w...   145   2e-33
B5RX22.1 B5RX22_RALSO Response regulator protein                      144   3e-33
D8NM73.1 D8NM73_RALSO Transcriptional regulatory protein              144   4e-33
D8N4N5.1 D8N4N5_RALSO Transcriptional regulatory protein              144   6e-33
A3RTS6.1 A3RTS6_RALSO Putative uncharacterized protein                144   6e-33

>A4JDJ3.1 A4JDJ3_BURVG Two component transcriptional regulator, winged helix
           family
          Length = 242

 Score =  145 bits (367), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 65/105 (61%), Positives = 86/105 (81%)

Query: 1   VRQLQFGELQIDLAARQVCWKGEEIDLKTSDYNLFVILVQAAGKVLSRDELLRRWRGIDF 60
           V+ LQFGEL I    R V W+GE +DLKT+++NL +IL +AAG VLSRD +L++ RGI+F
Sbjct: 138 VQALQFGELTISPPNRTVAWRGELVDLKTTEFNLLLILARAAGTVLSRDAILKQLRGIEF 197

Query: 61  DGMDRTVDVSISRLRKRFNDDAQEPRKIKTVWGRGYLFSPIAWEE 105
           DG+DR+VD  IS+LR+RF DD+ EP++IKT+WGRGYLFSP AW+E
Sbjct: 198 DGIDRSVDAGISKLRRRFEDDSSEPQRIKTIWGRGYLFSPSAWDE 242


>B5RX22.1 B5RX22_RALSO Response regulator protein
          Length = 243

 Score =  144 bits (364), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 65/102 (63%), Positives = 82/102 (80%)

Query: 4   LQFGELQIDLAARQVCWKGEEIDLKTSDYNLFVILVQAAGKVLSRDELLRRWRGIDFDGM 63
           L FGEL I    R V W+G+ +DLKT+++NL +IL +AAG VLSRD++L++ RGI+FDG+
Sbjct: 142 LVFGELAISPPNRTVTWRGQPVDLKTAEFNLLLILARAAGTVLSRDDILKQLRGIEFDGL 201

Query: 64  DRTVDVSISRLRKRFNDDAQEPRKIKTVWGRGYLFSPIAWEE 105
           DRTVD  ISRLR+RF D + EP KIKT+WGRGYLFSP AWEE
Sbjct: 202 DRTVDSGISRLRRRFGDASPEPHKIKTIWGRGYLFSPSAWEE 243


>D8NM73.1 D8NM73_RALSO Transcriptional regulatory protein
          Length = 243

 Score =  144 bits (363), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 65/102 (63%), Positives = 82/102 (80%)

Query: 4   LQFGELQIDLAARQVCWKGEEIDLKTSDYNLFVILVQAAGKVLSRDELLRRWRGIDFDGM 63
           L FGEL I    R V W+G+ +DLKT+++NL +IL +AAG VLSRD++L++ RGI+FDG+
Sbjct: 142 LVFGELAISPPNRTVIWRGQPVDLKTAEFNLLLILARAAGTVLSRDDILKQLRGIEFDGL 201

Query: 64  DRTVDVSISRLRKRFNDDAQEPRKIKTVWGRGYLFSPIAWEE 105
           DRTVD  ISRLR+RF D + EP KIKT+WGRGYLFSP AWEE
Sbjct: 202 DRTVDSGISRLRRRFGDASPEPHKIKTIWGRGYLFSPSAWEE 243


>D8N4N5.1 D8N4N5_RALSO Transcriptional regulatory protein
          Length = 243

 Score =  144 bits (362), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 65/102 (63%), Positives = 82/102 (80%)

Query: 4   LQFGELQIDLAARQVCWKGEEIDLKTSDYNLFVILVQAAGKVLSRDELLRRWRGIDFDGM 63
           L FGEL I    R V W+G+ +DLKT+++NL +IL +AAG VLSRD++L++ RGI+FDG+
Sbjct: 142 LVFGELVISPPNRTVTWRGQPVDLKTAEFNLLLILARAAGTVLSRDDILKQLRGIEFDGL 201

Query: 64  DRTVDVSISRLRKRFNDDAQEPRKIKTVWGRGYLFSPIAWEE 105
           DRTVD  ISRLR+RF D + EP KIKT+WGRGYLFSP AWEE
Sbjct: 202 DRTVDSGISRLRRRFGDASPEPHKIKTIWGRGYLFSPSAWEE 243


>A3RTS6.1 A3RTS6_RALSO Putative uncharacterized protein
          Length = 645

 Score =  144 bits (362), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 65/102 (63%), Positives = 82/102 (80%)

Query: 4   LQFGELQIDLAARQVCWKGEEIDLKTSDYNLFVILVQAAGKVLSRDELLRRWRGIDFDGM 63
           L FGEL I    R V W+G+ +DLKT+++NL +IL +AAG VLSRD++L++ RGI+FDG+
Sbjct: 544 LVFGELAISPPNRTVTWRGQLVDLKTAEFNLLLILARAAGTVLSRDDILKQLRGIEFDGL 603

Query: 64  DRTVDVSISRLRKRFNDDAQEPRKIKTVWGRGYLFSPIAWEE 105
           DRTVD  ISRLR+RF D + EP KIKT+WGRGYLFSP AWEE
Sbjct: 604 DRTVDSGISRLRRRFGDASPEPHKIKTIWGRGYLFSPSAWEE 645