BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0389.p (425 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q39HH7.1 Q39HH7_BURS3 Periplasmic sensor signal transduction his... 270 5e-70 B1JZL5.1 B1JZL5_BURCC Histidine kinase 259 6e-67 A0K6H6.1 A0K6H6_BURCH Periplasmic sensor signal transduction his... 258 9e-67 Q1BX76.1 Q1BX76_BURCA Periplasmic sensor signal transduction his... 256 7e-66 A4JDJ2.1 A4JDJ2_BURVG Integral membrane sensor signal transducti... 253 4e-65 >Q39HH7.1 Q39HH7_BURS3 Periplasmic sensor signal transduction histidine kinase Length = 458 Score = 270 bits (689), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 167/427 (39%), Positives = 239/427 (55%), Gaps = 16/427 (3%) Query: 1 LYLVIAALVVASILVVNYGFPHLFAGQFAKAVRAGFNGESFMLNRLLSGRSQADQEALLA 60 LYLV+ V ASI+ + F +F + A+A R +F+LN L ++ L Sbjct: 8 LYLVVILFVAASIIFIQLSFDRIFYDRSAQAERDSLTTYAFVLNDYLERHPGEQRKLALR 67 Query: 61 QLRAAAPERYS-RPVQTLEQLPPSVREQLAQYPVGWELTGSKCCV------VYVRLDDGG 113 +L ER+ P+ T R QL+ P+ +L + + Y+ L DG Sbjct: 68 ELAKHGNERFDFMPMAT-------ARAQLSGEPL-RDLDAGRISISYDGKDYYMPLADGS 119 Query: 114 LVRVQSLEELPM-VEVVAYVLVFSTILAAVCIWLIPHWRDLEKLRLAAARFGGGRLDARV 172 ++ + +E + +++ AY+L+ + L AV +W+ HWRDL +L+ AA FG G L RV Sbjct: 120 VLHARPIEAFSLDIKIYAYMLLALSTLLAVVLWVHYHWRDLRRLQEAARAFGAGTLSTRV 179 Query: 173 GLSGRSSIRQLSSHFDRMADRIGKLIHAQRDMVNAVSHELRTPLSRLEFGLDILQHHAPD 232 LSG+S+I +LS F+ MA+RI I QR+M++ +SHEL+TPL+RLEFGL +L Sbjct: 180 KLSGKSNIYELSQQFNDMAERIEASIKQQREMMHGISHELKTPLARLEFGLALLAEPDET 239 Query: 233 TATENRILGLRKDVEELEALVAELLTLGMLEHDRQGVFTETVALPEFLRDTCGVTAEALA 292 R LR+DV EL+ LV ELLT+G LE + V + + G A +A Sbjct: 240 GRMRERRDALRRDVRELDELVTELLTIGRLEQGASQLAPMEVVVDALIDSVAGSVANDIA 299 Query: 293 LGKLELRCSVDGQLATVVTEARTLARAYSNLVRNAAQHANSVVRVRAEMAAPDAWTLVVE 352 + L S G AT V + + +ARA NL+RN A++A+ V + AE A A L V+ Sbjct: 300 DRGITLDVSALGAPATHVCDPKLVARALLNLIRNGARYASRTVLLAAERTASGALVLSVD 359 Query: 353 DDGAGIPEAERERVFESFYRLDQSRDRATGGYGLGLSIVKKIVARHGGSISVGGSELGGA 412 DDG GIP AER RVFE F RLD SRDR TGG+GLGL+IV+++ HGG + + S LGGA Sbjct: 360 DDGPGIPAAERARVFEPFQRLDSSRDRQTGGFGLGLAIVRRVALVHGGDVRLEDSPLGGA 419 Query: 413 MFIMRLP 419 F++ LP Sbjct: 420 RFVITLP 426 >B1JZL5.1 B1JZL5_BURCC Histidine kinase Length = 461 Score = 259 bits (662), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 166/431 (38%), Positives = 236/431 (54%), Gaps = 14/431 (3%) Query: 1 LYLVIAALVVASILVVNYGFPHLFAGQFAKAVRAGFNGESFMLNRLLSGRSQADQEALLA 60 LYLV+ V ASI+ + F +F + A+A R SF+LN L A +E L Sbjct: 8 LYLVVILFVGASIIFIQLSFDRIFYERGAQAQRDSLTTYSFVLNDYLERHPGAQRELALR 67 Query: 61 QLRAAAPERYSRPVQTLEQLPPSVREQLAQYPVGWELTGSKCCV------VYVRLDDGGL 114 +L E + R QL+ P+ +L + + Y+ L DG + Sbjct: 68 ELALHGREGFGFMSMA------DARAQLSGAPL-RDLDAGRIAISYNGKDYYMPLADGSV 120 Query: 115 VRVQSLEELPM-VEVVAYVLVFSTILAAVCIWLIPHWRDLEKLRLAAARFGGGRLDARVG 173 + + +E + + + AY+L+ L AV +W+ HWRD+ +L+ AA FG G L RV Sbjct: 121 LHARPIEAPDLDIRIYAYMLLALATLFAVVLWIHYHWRDIRRLQDAARAFGAGMLSTRVK 180 Query: 174 LSGRSSIRQLSSHFDRMADRIGKLIHAQRDMVNAVSHELRTPLSRLEFGLDILQHHAPDT 233 LSG+S+I +LS F+ MA RI I QR+M++ +SHEL+TPL+RLEFGL +L Sbjct: 181 LSGKSNIYELSQQFNDMAARIEASIKQQREMMHGISHELKTPLARLEFGLALLADADETG 240 Query: 234 ATENRILGLRKDVEELEALVAELLTLGMLEHDRQGVFTETVALPEFLRDTCGVTAEALAL 293 R LR+DV EL+ LV ELLT+G LE + V + + G A+ +A Sbjct: 241 RMRERRDALRRDVRELDELVTELLTIGRLEQGASELAPMEVVVDALIDSVAGNVADDIAD 300 Query: 294 GKLELRCSVDGQLATVVTEARTLARAYSNLVRNAAQHANSVVRVRAEMAAPDAWTLVVED 353 + L S AT V + + +ARA NL+RN A++A+ V + A + A L V+D Sbjct: 301 RGIALDVSTLDAPATHVCDPKLVARALLNLIRNGARYASRKVVLAATRDSSGALVLSVDD 360 Query: 354 DGAGIPEAERERVFESFYRLDQSRDRATGGYGLGLSIVKKIVARHGGSISVGGSELGGAM 413 DG GIP AER RVFE F RLD SRDR TGG+GLGL+IV+++ HGG + + S LGGA Sbjct: 361 DGPGIPAAERARVFEPFQRLDSSRDRQTGGFGLGLAIVRRVAQVHGGDVRLEDSPLGGAR 420 Query: 414 FIMRLPLRQLP 424 F++ LP+R LP Sbjct: 421 FVITLPVRALP 431 >A0K6H6.1 A0K6H6_BURCH Periplasmic sensor signal transduction histidine kinase Length = 461 Score = 258 bits (660), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 166/431 (38%), Positives = 235/431 (54%), Gaps = 14/431 (3%) Query: 1 LYLVIAALVVASILVVNYGFPHLFAGQFAKAVRAGFNGESFMLNRLLSGRSQADQEALLA 60 LYLV+ V ASI+ + F +F + A+A R SF+LN L A +E L Sbjct: 8 LYLVVILFVGASIIFIQLSFDRIFYERGAQAQRDSLTTYSFVLNDYLERHPGAQRELALR 67 Query: 61 QLRAAAPERYSRPVQTLEQLPPSVREQLAQYPVGWELTGSKCCV------VYVRLDDGGL 114 +L E + R QL+ P+ +L + + Y+ L DG + Sbjct: 68 ELALHGREGFGFMSMA------DARAQLSGAPL-RDLDAGRIAISYNGKDYYMPLADGSV 120 Query: 115 VRVQSLEELPM-VEVVAYVLVFSTILAAVCIWLIPHWRDLEKLRLAAARFGGGRLDARVG 173 + + +E + + + AY+L+ L AV +W+ HWRD+ +L+ AA FG G L RV Sbjct: 121 LHARPIEAPDLDIRIYAYMLLALATLFAVVLWIHYHWRDIRRLQDAARAFGAGMLSTRVK 180 Query: 174 LSGRSSIRQLSSHFDRMADRIGKLIHAQRDMVNAVSHELRTPLSRLEFGLDILQHHAPDT 233 LSG+S+I +LS F+ MA RI I QR+M++ +SHEL+TPL+RLEFGL +L Sbjct: 181 LSGKSNIYELSQQFNDMAARIEASIKQQREMMHGISHELKTPLARLEFGLALLADADETG 240 Query: 234 ATENRILGLRKDVEELEALVAELLTLGMLEHDRQGVFTETVALPEFLRDTCGVTAEALAL 293 R LR+DV EL+ LV ELLT+G LE + V + + G A+ +A Sbjct: 241 RMRERRDALRRDVRELDELVTELLTIGRLEQGASELAPMEVVVDALIDSVAGNVADDIAD 300 Query: 294 GKLELRCSVDGQLATVVTEARTLARAYSNLVRNAAQHANSVVRVRAEMAAPDAWTLVVED 353 + L S AT V + + +ARA NL+RN A++A+ V + A A L V+D Sbjct: 301 RGIALDVSTFDAPATHVCDPKLVARALLNLIRNGARYASRKVVLAATRDPSGALVLSVDD 360 Query: 354 DGAGIPEAERERVFESFYRLDQSRDRATGGYGLGLSIVKKIVARHGGSISVGGSELGGAM 413 DG GIP AER RVFE F RLD SRDR TGG+GLGL+IV+++ HGG + + S LGGA Sbjct: 361 DGPGIPAAERARVFEPFQRLDSSRDRQTGGFGLGLAIVRRVAQVHGGDVRLEDSPLGGAR 420 Query: 414 FIMRLPLRQLP 424 F++ LP+R LP Sbjct: 421 FVITLPVRALP 431 >Q1BX76.1 Q1BX76_BURCA Periplasmic sensor signal transduction histidine kinase Length = 469 Score = 256 bits (653), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 167/432 (38%), Positives = 237/432 (54%), Gaps = 19/432 (4%) Query: 1 LYLVIAALVVASILVVNYGFPHLFAGQFAKAVRAGFNGESFMLNRLLSGRSQADQEALLA 60 LYLV+ V ASI+ + F +F + A+A R SF+LN L A +E L Sbjct: 8 LYLVVILFVGASIIFIQLSFDRIFYERGAQAQRDSLTTYSFVLNDYLERHPGAQRELALR 67 Query: 61 QLRAAAPERYSRPVQTLEQLPPSVREQLAQYPVGWELTGSKCCV------VYVRLDDGGL 114 +L E + R QL+ P+ +L + + Y+ L DG + Sbjct: 68 ELALHGREGFGFMSMA------DARAQLSGAPL-RDLDAGRIAISYNGKDYYMPLADGSV 120 Query: 115 VRVQSLEELPM-VEVVAYVLVFSTILAAVCIWLIPHWRDLEKLRLAAARFGGGRLDARVG 173 + + +E + + + AY+L+ L AV +W+ HWRD+ +L+ AA FG G L RV Sbjct: 121 LHARPIEAPDLDIRIYAYMLLALATLFAVVLWIHYHWRDIRRLQDAARAFGAGMLSTRVK 180 Query: 174 LSGRSSIRQLSSHFDRMADRIGKLIHAQRDMVNAVSHELRTPLSRLEFGLDILQHHAPDT 233 LSG+S+I +LS F+ MA RI I QR+M++ +SHEL+TPL+RLEFGL +L D Sbjct: 181 LSGKSNIYELSQQFNDMAARIEASIKQQREMMHGISHELKTPLARLEFGLALLA----DA 236 Query: 234 ATENRIL-GLRKDVEELEALVAELLTLGMLEHDRQGVFTETVALPEFLRDTCGVTAEALA 292 R+ LR+DV EL+ LV ELLT+G LE + V + + G A+ +A Sbjct: 237 DETGRMRDALRRDVRELDELVTELLTIGRLEQGASELAPMEVVVDALIDSVAGNVADDIA 296 Query: 293 LGKLELRCSVDGQLATVVTEARTLARAYSNLVRNAAQHANSVVRVRAEMAAPDAWTLVVE 352 + L S AT V + + +ARA NL+RN A++A+ V + A A L V+ Sbjct: 297 DRGIALDVSTFDAPATHVCDPKLVARALLNLIRNGARYASRKVVLAATRDPSGALVLSVD 356 Query: 353 DDGAGIPEAERERVFESFYRLDQSRDRATGGYGLGLSIVKKIVARHGGSISVGGSELGGA 412 DDG GIP AER RVFE F RLD SRDR TGG+GLGL+IV+++ HGG + + S LGGA Sbjct: 357 DDGPGIPAAERARVFEPFQRLDSSRDRQTGGFGLGLAIVRRVAQVHGGDVRLEDSPLGGA 416 Query: 413 MFIMRLPLRQLP 424 F++ LP+R LP Sbjct: 417 RFVITLPVRALP 428 >A4JDJ2.1 A4JDJ2_BURVG Integral membrane sensor signal transduction histidine kinase Length = 427 Score = 253 bits (646), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 162/426 (38%), Positives = 235/426 (55%), Gaps = 14/426 (3%) Query: 1 LYLVIAALVVASILVVNYGFPHLFAGQFAKAVRAGFNGESFMLNRLLSGRSQADQEALLA 60 LYL++ A+++ V + F +F + A+A R +F+LN L A + L+ Sbjct: 8 LYLIVIVSCAAAVVFVQWSFDKIFYERVAQAQRDTLTTYAFVLNDYLERHPGAKRTLALS 67 Query: 61 QLRAAAPERYSRPVQTLEQLPPSVREQLAQYPVGWELTGSKCCVVYVR------LDDGGL 114 +L ER+ R QL+ P+ +L + + Y R L DG + Sbjct: 68 ELGQHGNERFGFLTMA------DARAQLSDAPLR-DLDAGRIAISYDRRNYYMPLADGSV 120 Query: 115 VRVQSLEELPM-VEVVAYVLVFSTILAAVCIWLIPHWRDLEKLRLAAARFGGGRLDARVG 173 + + ++ + V++ A ++ L AV +W HWRDL KL+ AA FG G L RV Sbjct: 121 LHARPIQPAMLDVKIYANGMIALAALFAVALWTSHHWRDLRKLQTAAHAFGAGELSTRVR 180 Query: 174 LSGRSSIRQLSSHFDRMADRIGKLIHAQRDMVNAVSHELRTPLSRLEFGLDILQHHAPDT 233 LS RS+I +LS F+ MA+RI I QR+M++A+SHEL+TPL+RLEFGL +L + Sbjct: 181 LSARSNIYELSVQFNDMAERIEASIKQQREMMHAISHELKTPLARLEFGLALLADADDSS 240 Query: 234 ATENRILGLRKDVEELEALVAELLTLGMLEHDRQGVFTETVALPEFLRDTCGVTAEALAL 293 + R LR+DV EL+ LV ELLT+G LE + VA+ + G A +A Sbjct: 241 RMQTRCDALRRDVRELDELVTELLTIGRLEQGASELEPMEVAVDALIDSVAGSVANDVAD 300 Query: 294 GKLELRCSVDGQLATVVTEARTLARAYSNLVRNAAQHANSVVRVRAEMAAPDAWTLVVED 353 + L S G A+ V + + +ARA NL+RN A++A+ V + A A A L V+D Sbjct: 301 RGIMLDVSTTGAPASHVCDPKLVARALLNLIRNGARYASRTVLLSAASDASGALVLSVDD 360 Query: 354 DGAGIPEAERERVFESFYRLDQSRDRATGGYGLGLSIVKKIVARHGGSISVGGSELGGAM 413 DG GIP A+R RVFE F RLD SRDR TGG+GLGL+IV+++ HGG + + S LGGA Sbjct: 361 DGPGIPVADRARVFEPFQRLDSSRDRQTGGFGLGLAIVRRVARVHGGEVWLEDSPLGGAR 420 Query: 414 FIMRLP 419 F++ LP Sbjct: 421 FVISLP 426