BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0377.p (291 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IXG8.1 D8IXG8_HERSS LysR family transcription regulator protein 427 e-118 Q13Y95.1 Q13Y95_BURXL Transcriptional regulator, LysR family 378 e-103 D5NR55.1 D5NR55_9BURK Transcriptional regulator, LysR family 377 e-102 B2T4Y4.1 B2T4Y4_BURPP Transcriptional regulator, LysR family 375 e-102 B5WUW8.1 B5WUW8_9BURK Transcriptional regulator, LysR family 375 e-102 >D8IXG8.1 D8IXG8_HERSS LysR family transcription regulator protein Length = 297 Score = 427 bits (1098), Expect = e-118, Method: Compositional matrix adjust. Identities = 221/287 (77%), Positives = 248/287 (86%), Gaps = 8/287 (2%) Query: 1 MFNPVWLKTFTTVAASSSFSEAGRRLGLTQSSVSDHIRRLEDGSGRRLFVRDTHSLALTA 60 M NP+WL+TF+T A+S+SF+EAGR+LGLTQS+VSDHIRRLE+ GRRLFVRDTHSLALTA Sbjct: 16 MLNPIWLQTFSTAASSASFTEAGRQLGLTQSTVSDHIRRLEESLGRRLFVRDTHSLALTA 75 Query: 61 DGESLLVHARLILEAHARAEAQFTAPRLRGRVRFGAPDDLAMGPLPDMLAAFRNKHPEVE 120 DGESLLVHARLIL+AHARAEAQF+APRLRGRVRFG DDLAMGPLPDMLAAFR++HPEVE Sbjct: 76 DGESLLVHARLILQAHARAEAQFSAPRLRGRVRFGTSDDLAMGPLPDMLAAFRSQHPEVE 135 Query: 121 LEITIGLTGELYQRLDNGDLDLIVGKRRPGEQRGQAMFRVPLVWLARPETVVDLAQPLPL 180 LEITIGLT +LY LD G LDL+VGKRR GE RG +MF P+ WL RP+T+VDLA+PLPL Sbjct: 136 LEITIGLTSDLYASLDQGKLDLLVGKRRSGESRGHSMFSTPMQWLTRPDTLVDLAEPLPL 195 Query: 181 ILLPEPSVTRAAILATLGAAGRHWRIVCTSGSHAGCMAAARXPARARARGGLGLTVLPQH 240 ILLPEPS+TRAA L LG +G HWRIVCTSGSHAGCMAA ARGGLGL LPQH Sbjct: 196 ILLPEPSITRAATLQALGKSGHHWRIVCTSGSHAGCMAA--------ARGGLGLAALPQH 247 Query: 241 LASRELSLPVNHASLPVFPDVEYVALAAKRLSRPADTLFQILMASEL 287 LASR+L P+NHA+LP PDVEYVAL A+RLSRPADTL+QILMAS L Sbjct: 248 LASRDLVPPLNHAALPALPDVEYVALTARRLSRPADTLYQILMASRL 294 >Q13Y95.1 Q13Y95_BURXL Transcriptional regulator, LysR family Length = 286 Score = 378 bits (971), Expect = e-103, Method: Compositional matrix adjust. Identities = 190/287 (66%), Positives = 232/287 (80%), Gaps = 8/287 (2%) Query: 1 MFNPVWLKTFTTVAASSSFSEAGRRLGLTQSSVSDHIRRLEDGSGRRLFVRDTHSLALTA 60 M NP+WLKTF+TVAA SF+EAGRRLGLTQSSVS+HIRRLE+ GRRLFVRDTHSLA+T Sbjct: 1 MLNPIWLKTFSTVAACHSFTEAGRRLGLTQSSVSEHIRRLEESVGRRLFVRDTHSLAMTP 60 Query: 61 DGESLLVHARLILEAHARAEAQFTAPRLRGRVRFGAPDDLAMGPLPDMLAAFRNKHPEVE 120 DGE++L HA +IL+A ARAE+QF APRL+GRVR G+ DD+A+GPLP +LAAFRN HP+VE Sbjct: 61 DGEAMLAHASVILQALARAESQFRAPRLKGRVRLGSSDDVALGPLPTVLAAFRNAHPDVE 120 Query: 121 LEITIGLTGELYQRLDNGDLDLIVGKRRPGEQRGQAMFRVPLVWLARPETVVDLAQPLPL 180 LEITIG+TG+LY+ LD G +DL+VGKRR G++RG +F L WLAR T+VDL+QPLPL Sbjct: 121 LEITIGMTGKLYELLDAGAIDLLVGKRRLGDRRGVPLFTGRLEWLARAGTLVDLSQPLPL 180 Query: 181 ILLPEPSVTRAAILATLGAAGRHWRIVCTSGSHAGCMAAARXPARARARGGLGLTVLPQH 240 IL+ EPSVTRA +L L AG W++VCTS SHAGC+AA ARGGLG+ V PQ+ Sbjct: 181 ILVAEPSVTRAVVLDALAEAGFRWQVVCTSSSHAGCIAA--------ARGGLGIMVRPQY 232 Query: 241 LASRELSLPVNHASLPVFPDVEYVALAAKRLSRPADTLFQILMASEL 287 LA+R L+ P+N ASLP P VE++ALAAKRLSRPA TL ++L S+L Sbjct: 233 LAARGLAAPLNAASLPALPSVEFIALAAKRLSRPAGTLLKLLHDSDL 279 >D5NR55.1 D5NR55_9BURK Transcriptional regulator, LysR family Length = 286 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 189/287 (65%), Positives = 231/287 (80%), Gaps = 8/287 (2%) Query: 1 MFNPVWLKTFTTVAASSSFSEAGRRLGLTQSSVSDHIRRLEDGSGRRLFVRDTHSLALTA 60 M NP+WLKTF+TVAA SF+EAGRRLGLTQSSVS+HIRRLE+ GRRLFVRDTHSLA+T Sbjct: 1 MLNPIWLKTFSTVAACHSFTEAGRRLGLTQSSVSEHIRRLEESVGRRLFVRDTHSLAMTP 60 Query: 61 DGESLLVHARLILEAHARAEAQFTAPRLRGRVRFGAPDDLAMGPLPDMLAAFRNKHPEVE 120 DGE++L HA +IL+A RAE+QF APRL+GRVR G+ DD+A+GPLP +LAAFRN HP+VE Sbjct: 61 DGEAMLAHASVILQALTRAESQFRAPRLKGRVRLGSSDDVALGPLPTVLAAFRNAHPDVE 120 Query: 121 LEITIGLTGELYQRLDNGDLDLIVGKRRPGEQRGQAMFRVPLVWLARPETVVDLAQPLPL 180 LEITIG+TG+LY+ LD G +DL+VGKRR G++RG +F L WLAR T+VDL+QPLPL Sbjct: 121 LEITIGMTGKLYELLDAGAIDLLVGKRRLGDRRGVPLFTGRLEWLARAGTLVDLSQPLPL 180 Query: 181 ILLPEPSVTRAAILATLGAAGRHWRIVCTSGSHAGCMAAARXPARARARGGLGLTVLPQH 240 IL+ EPSVTRA +L L AG W++VCTS SHAGC+AA ARGGLG+ V PQ+ Sbjct: 181 ILVAEPSVTRAVVLDALAEAGFRWQVVCTSSSHAGCIAA--------ARGGLGIMVRPQY 232 Query: 241 LASRELSLPVNHASLPVFPDVEYVALAAKRLSRPADTLFQILMASEL 287 LA+R L+ P+N ASLP P VE++ALAAKRLSRPA TL ++L S+L Sbjct: 233 LAARGLAAPLNTASLPALPSVEFIALAAKRLSRPAGTLLKLLHDSDL 279 >B2T4Y4.1 B2T4Y4_BURPP Transcriptional regulator, LysR family Length = 286 Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust. Identities = 189/287 (65%), Positives = 231/287 (80%), Gaps = 8/287 (2%) Query: 1 MFNPVWLKTFTTVAASSSFSEAGRRLGLTQSSVSDHIRRLEDGSGRRLFVRDTHSLALTA 60 M NP+WLKTF+TVAA SF+EAGRRL LTQSSVS+HIRRLE GRRLFVRDTHSLA+T Sbjct: 1 MLNPIWLKTFSTVAACHSFTEAGRRLDLTQSSVSEHIRRLEQSVGRRLFVRDTHSLAMTP 60 Query: 61 DGESLLVHARLILEAHARAEAQFTAPRLRGRVRFGAPDDLAMGPLPDMLAAFRNKHPEVE 120 DGE++L HA +IL+A ARAE+QF APRL+GRVR G+ DD+A+GPLP +LAAFR+ HP+VE Sbjct: 61 DGEAMLAHASVILQALARAESQFRAPRLKGRVRLGSSDDVALGPLPTVLAAFRDAHPDVE 120 Query: 121 LEITIGLTGELYQRLDNGDLDLIVGKRRPGEQRGQAMFRVPLVWLARPETVVDLAQPLPL 180 LEITIG+TG+LY+ LD G +DL+VGKRR G++RG +F L WLAR T+VDL+QPLPL Sbjct: 121 LEITIGMTGKLYELLDAGAIDLLVGKRRLGDRRGVPLFTGRLEWLARAGTLVDLSQPLPL 180 Query: 181 ILLPEPSVTRAAILATLGAAGRHWRIVCTSGSHAGCMAAARXPARARARGGLGLTVLPQH 240 IL+ EPSVTRA +L L AG W++VCTS SHAGC+AA ARGGLG+TV PQ+ Sbjct: 181 ILVAEPSVTRAVVLDALAEAGFSWQLVCTSSSHAGCIAA--------ARGGLGITVRPQY 232 Query: 241 LASRELSLPVNHASLPVFPDVEYVALAAKRLSRPADTLFQILMASEL 287 LA+R L+ P+N ASLP P VE++ALAAKRLS+PA TL Q+L S+L Sbjct: 233 LAARGLAAPLNMASLPTLPSVEFIALAAKRLSKPAGTLLQLLHDSDL 279 >B5WUW8.1 B5WUW8_9BURK Transcriptional regulator, LysR family Length = 286 Score = 375 bits (962), Expect = e-102, Method: Compositional matrix adjust. Identities = 189/287 (65%), Positives = 229/287 (79%), Gaps = 8/287 (2%) Query: 1 MFNPVWLKTFTTVAASSSFSEAGRRLGLTQSSVSDHIRRLEDGSGRRLFVRDTHSLALTA 60 M NP+WLKTF+TVAA SF+EAGRRL LTQSSVS+HIRRLE GRRLFVRDTHSLA+T Sbjct: 1 MLNPIWLKTFSTVAACHSFTEAGRRLDLTQSSVSEHIRRLEQSVGRRLFVRDTHSLAMTP 60 Query: 61 DGESLLVHARLILEAHARAEAQFTAPRLRGRVRFGAPDDLAMGPLPDMLAAFRNKHPEVE 120 DGE++L HA +IL+A +RAE+QF APRL+GRVR G+ DD+A+GPLP +LAAFRN HP+VE Sbjct: 61 DGEAMLAHASVILQALSRAESQFRAPRLKGRVRLGSSDDIALGPLPTVLAAFRNAHPDVE 120 Query: 121 LEITIGLTGELYQRLDNGDLDLIVGKRRPGEQRGQAMFRVPLVWLARPETVVDLAQPLPL 180 LEITIG+TG LY+ LD G +DL+VGKRR G++RG +F L WLAR T+VDL+QPLPL Sbjct: 121 LEITIGMTGRLYELLDAGAIDLLVGKRRLGDRRGVPLFTGRLEWLARTGTLVDLSQPLPL 180 Query: 181 ILLPEPSVTRAAILATLGAAGRHWRIVCTSGSHAGCMAAARXPARARARGGLGLTVLPQH 240 IL+ EPSVTRA +L L AG W+IVCTS SH+GC+AA ARGGLG+TV PQ+ Sbjct: 181 ILVAEPSVTRAVVLDALAEAGASWQIVCTSSSHSGCIAA--------ARGGLGITVRPQY 232 Query: 241 LASRELSLPVNHASLPVFPDVEYVALAAKRLSRPADTLFQILMASEL 287 LA+R L+ P+N A LP P VE++ALAAKRLSRPA TL Q+L S+L Sbjct: 233 LAARGLAPPLNAAGLPTLPSVEFIALAAKRLSRPAGTLLQLLHYSDL 279