BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0311.p         (191 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q46QV0.1 Q46QV0_CUPPJ Histidine kinase, HAMP region:Cache:Bacter...   193   8e-48
B2UGT8.1 B2UGT8_RALPJ Methyl-accepting chemotaxis sensory transd...   189   1e-46
Q8XU86.1 Q8XU86_RALSO Putative methyl-accepting chemotaxis trans...   185   2e-45
C6BH69.1 C6BH69_RALP1 Methyl-accepting chemotaxis sensory transd...   185   3e-45
E2SXE7.1 E2SXE7_9RALS Methyl-accepting chemotaxis protein             183   1e-44

>Q46QV0.1 Q46QV0_CUPPJ Histidine kinase, HAMP region:Cache:Bacterial
           chemotaxis sensory transducer
          Length = 599

 Score =  193 bits (491), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 93/181 (51%), Positives = 129/181 (71%), Gaps = 1/181 (0%)

Query: 1   LLRSGGFSLTTAGWQDKHFVSSTPGLPANYDPTGRPWYQDSLKAKKPLVTRPYRSAT-GV 59
           L ++G F +TTAGWQDK FV+S   +P+ +DPT RPWY+++L A KP+VT+PY  AT G 
Sbjct: 85  LQKAGAFPITTAGWQDKSFVASKDQMPSGFDPTARPWYKETLAAAKPIVTKPYADATTGK 144

Query: 60  ILVSFTAPILREGIVYGVVAGGVSLDTVRQVVRAIHPTPASIGFVVDAGGTVIAHPDEKL 119
             VSF API+R+G+  GVV+  VSLD VR VV A+ PTP S+GFVVD    ++AHPD K 
Sbjct: 145 PFVSFAAPIVRDGVTSGVVSAVVSLDGVRDVVTAVRPTPESLGFVVDKDANILAHPDAKY 204

Query: 120 LLKPATDIAPSLTVAQLDGMARDGSVSEVEMDGAGKWLRAVPIPGTDWRLVISLDRHDAG 179
           + KPA +++ +LT   L  +  +G+  E+E+DG  K LRA PI GT+W+LV++LD+ +A 
Sbjct: 205 IRKPALELSQALTPQALASLESEGNPLEIELDGRMKLLRARPIHGTNWQLVVALDKAEAT 264

Query: 180 A 180
           A
Sbjct: 265 A 265


>B2UGT8.1 B2UGT8_RALPJ Methyl-accepting chemotaxis sensory transducer with
           Cache sensor
          Length = 600

 Score =  189 bits (481), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 95/178 (53%), Positives = 126/178 (70%), Gaps = 1/178 (0%)

Query: 4   SGGFSLTTAGWQDKHFVSSTPGLPANYDPTGRPWYQDSLKAKKPLVTRPY-RSATGVILV 62
           + GF + T GW DK F+S++   P +YDPTGRPWY+ ++ A + LVT+PY   +TGV  V
Sbjct: 88  ANGFPIITIGWTDKSFISTSATTPKDYDPTGRPWYKQAIAAGQLLVTKPYGDVSTGVPYV 147

Query: 63  SFTAPILREGIVYGVVAGGVSLDTVRQVVRAIHPTPASIGFVVDAGGTVIAHPDEKLLLK 122
           SF AP+++ G   G ++G V LD VR+VV A+HPTP+S+ FVV   G VIAHPD KL+LK
Sbjct: 148 SFAAPLVKNGETTGALSGAVPLDGVREVVAAVHPTPSSLAFVVAKDGQVIAHPDAKLMLK 207

Query: 123 PATDIAPSLTVAQLDGMARDGSVSEVEMDGAGKWLRAVPIPGTDWRLVISLDRHDAGA 180
           PATD+APSLTV  L  +A+  S  EVE+ GA K L+A  + GTDW LVI+LD+ +A A
Sbjct: 208 PATDVAPSLTVDTLANLAKATSPLEVELAGAPKLLKAQAVQGTDWYLVIALDKAEATA 265


>Q8XU86.1 Q8XU86_RALSO Putative methyl-accepting chemotaxis transmembrane
           protein
          Length = 646

 Score =  185 bits (470), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 91/176 (51%), Positives = 123/176 (69%), Gaps = 1/176 (0%)

Query: 6   GFSLTTAGWQDKHFVSSTPGLPANYDPTGRPWYQDSLKAKKPLVTRPY-RSATGVILVSF 64
           GF +TT GW DK F S++ G P +YDPT RPWY+ ++ A KP VT+PY  ++TGV  VSF
Sbjct: 136 GFPITTVGWTDKTFFSTSAGTPKDYDPTARPWYKSAIAAGKPTVTKPYGDASTGVPYVSF 195

Query: 65  TAPILREGIVYGVVAGGVSLDTVRQVVRAIHPTPASIGFVVDAGGTVIAHPDEKLLLKPA 124
            AP++R G   G ++G V LD VR+VV A+HPTP+S+ FVV   G VIAHPD KL+LKP 
Sbjct: 196 AAPLMRNGAATGALSGAVPLDGVREVVAAVHPTPSSLAFVVARDGQVIAHPDAKLMLKPV 255

Query: 125 TDIAPSLTVAQLDGMARDGSVSEVEMDGAGKWLRAVPIPGTDWRLVISLDRHDAGA 180
           T+++ +LT   L  +A+  +  EVE+ GA K L+A  + GTDW LVI+LD+ +A A
Sbjct: 256 TEVSAALTPDALTSLAKATAPLEVELAGAAKLLKAQAVQGTDWYLVIALDKAEATA 311


>C6BH69.1 C6BH69_RALP1 Methyl-accepting chemotaxis sensory transducer with
           Cache sensor
          Length = 600

 Score =  185 bits (469), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 93/178 (52%), Positives = 124/178 (69%), Gaps = 1/178 (0%)

Query: 4   SGGFSLTTAGWQDKHFVSSTPGLPANYDPTGRPWYQDSLKAKKPLVTRPY-RSATGVILV 62
           + GF + T GW DK F+S++   P +YDPTGRPWY+ ++ A + LVT+PY   +TGV  V
Sbjct: 88  ANGFPIITIGWTDKSFISTSATTPKDYDPTGRPWYKQAIAAGQLLVTKPYGDVSTGVPYV 147

Query: 63  SFTAPILREGIVYGVVAGGVSLDTVRQVVRAIHPTPASIGFVVDAGGTVIAHPDEKLLLK 122
           SF AP+++ G   G ++G V LD VR+VV A+HPTP+S+ FVV   G VIAHPD KL+LK
Sbjct: 148 SFAAPLVKNGETTGALSGAVPLDGVREVVAAVHPTPSSLAFVVAKDGQVIAHPDAKLMLK 207

Query: 123 PATDIAPSLTVAQLDGMARDGSVSEVEMDGAGKWLRAVPIPGTDWRLVISLDRHDAGA 180
           PATD+A SLT   L  +A+  S  EVE+ GA K L+A  + GTDW LVI+LD+ +A A
Sbjct: 208 PATDVAASLTADTLGNLAKATSPLEVELAGAPKLLKAQAVQGTDWYLVIALDKAEATA 265


>E2SXE7.1 E2SXE7_9RALS Methyl-accepting chemotaxis protein
          Length = 600

 Score =  183 bits (464), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 92/178 (51%), Positives = 122/178 (68%), Gaps = 1/178 (0%)

Query: 4   SGGFSLTTAGWQDKHFVSSTPGLPANYDPTGRPWYQDSLKAKKPLVTRPY-RSATGVILV 62
           + GF + T GW DK F+S++   P +YDPT RPWY+ +L A + LVT+PY   +TGV  V
Sbjct: 88  ANGFPIITIGWTDKSFISTSATTPKDYDPTARPWYKQALAAGQLLVTKPYGDVSTGVPYV 147

Query: 63  SFTAPILREGIVYGVVAGGVSLDTVRQVVRAIHPTPASIGFVVDAGGTVIAHPDEKLLLK 122
           SF AP+++ G   G ++G V LD VR+VV A+HPTP+S+ FVV   G VIAHPD KL+LK
Sbjct: 148 SFAAPLVKNGETTGALSGAVPLDGVREVVAAVHPTPSSLAFVVAKDGQVIAHPDAKLMLK 207

Query: 123 PATDIAPSLTVAQLDGMARDGSVSEVEMDGAGKWLRAVPIPGTDWRLVISLDRHDAGA 180
           PATD+A SLT   L  + +  S  EVE+ GA K L+A  + GTDW LVI+LD+ +A A
Sbjct: 208 PATDVAASLTAETLANLVKATSPLEVELAGAPKLLKAQAVQGTDWYLVIALDKAEATA 265