BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0310.p (223 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8J0T8.1 D8J0T8_HERSS Methyl-accepting chemotaxis transmembrane ... 277 7e-73 C6BCW8.1 C6BCW8_RALP1 Methyl-accepting chemotaxis sensory transd... 247 1e-63 E2SYD0.1 E2SYD0_9RALS Methyl-accepting chemotaxis protein 245 3e-63 B2U6I7.1 B2U6I7_RALPJ Methyl-accepting chemotaxis sensory transd... 245 4e-63 D8N785.1 D8N785_RALSO Putative methyl-accepting chemotaxis prote... 244 6e-63 >D8J0T8.1 D8J0T8_HERSS Methyl-accepting chemotaxis transmembrane protein Length = 625 Score = 277 bits (709), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 144/212 (67%), Positives = 176/212 (83%), Gaps = 1/212 (0%) Query: 1 VLGASAVAALLLAALSTLVSSVATARSFTRLSRVRDAMDVIASGTGDLTQRLPVTGR-DE 59 +L +S V A+L+ L+ LV +R RL+ V+ A++ IA G GDLT+RL GR DE Sbjct: 291 MLVSSGVMAVLVTVLAALVLGALISRLLGRLTVVQGALEEIADGDGDLTRRLDTHGRSDE 350 Query: 60 VAQIASSFNRFVDKIEHVLLEIRDSSRTIHMASRDIASGNLDLSSRTEAQASSLEETAAA 119 + +I ++FNRFVDKIEHV+++IRD+S TIH ASRDIASGN+DLS RTE+QASSLE+TAAA Sbjct: 351 LGRIGAAFNRFVDKIEHVMIDIRDASHTIHAASRDIASGNMDLSQRTESQASSLEQTAAA 410 Query: 120 MEQITSSVQNNTDNAIQANRLSASASDIAGRGGDMVEQVVQAMNAINSSSRKVVEIISVI 179 MEQ+TSSV++N DNA+QAN+LS SAS IA +GG MVEQVVQ MN IN+SS+K+V+IISVI Sbjct: 411 MEQLTSSVRHNADNAMQANQLSQSASQIATQGGTMVEQVVQTMNGINASSQKIVDIISVI 470 Query: 180 DGIAFQTNILALNAAVEATRAGEQGRGFAVVA 211 DGIAFQTNILALNAAVEA RAGEQGRGFAVVA Sbjct: 471 DGIAFQTNILALNAAVEAARAGEQGRGFAVVA 502 >C6BCW8.1 C6BCW8_RALP1 Methyl-accepting chemotaxis sensory transducer with Cache sensor Length = 608 Score = 247 bits (630), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 129/211 (61%), Positives = 164/211 (77%), Gaps = 8/211 (3%) Query: 1 VLGASAVAALLLAALSTLVSSVATARSFTRLSRVRDAMDVIASGTGDLTQRLPVTGRDEV 60 ++G + VAAL++ A+ T+R+F RLS +RDAMD I SG+GDLT+RLP G DEV Sbjct: 287 LVGVAIVAALIVGAM--------TSRAFRRLSMIRDAMDEIGSGSGDLTKRLPSDGEDEV 338 Query: 61 AQIASSFNRFVDKIEHVLLEIRDSSRTIHMASRDIASGNLDLSSRTEAQASSLEETAAAM 120 AQIA SFN F DK+ V+ +IR S ++ A+++IA+GN DLS RTE QASSLEETA++M Sbjct: 339 AQIARSFNTFADKLTAVMQQIRLGSDSVRSAAQEIAAGNADLSQRTEEQASSLEETASSM 398 Query: 121 EQITSSVQNNTDNAIQANRLSASASDIAGRGGDMVEQVVQAMNAINSSSRKVVEIISVID 180 E++TS V+ N DNA QA++L+ +ASD+A RGGD+V QVVQ M IN SS+K+ +II VI+ Sbjct: 399 EELTSIVKQNADNARQASQLAVTASDVATRGGDVVGQVVQTMGGINESSKKIADIIGVIE 458 Query: 181 GIAFQTNILALNAAVEATRAGEQGRGFAVVA 211 IAFQTNILALNAAVEA RAGEQGRGFAVVA Sbjct: 459 SIAFQTNILALNAAVEAARAGEQGRGFAVVA 489 >E2SYD0.1 E2SYD0_9RALS Methyl-accepting chemotaxis protein Length = 600 Score = 245 bits (626), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 129/211 (61%), Positives = 164/211 (77%), Gaps = 8/211 (3%) Query: 1 VLGASAVAALLLAALSTLVSSVATARSFTRLSRVRDAMDVIASGTGDLTQRLPVTGRDEV 60 ++G + VAAL++ A+ TAR+F RLS +RDAMD I SG+GDLT+RLP G DEV Sbjct: 279 LVGVAIVAALIVGAM--------TARAFRRLSMIRDAMDDIGSGSGDLTKRLPSDGEDEV 330 Query: 61 AQIASSFNRFVDKIEHVLLEIRDSSRTIHMASRDIASGNLDLSSRTEAQASSLEETAAAM 120 AQIA SFN F DK+ V+ +IR S ++ A+++IA+GN DLS RTE QASSLEETA++M Sbjct: 331 AQIARSFNAFADKLTAVMQQIRLGSDSVRSAAQEIAAGNADLSQRTEEQASSLEETASSM 390 Query: 121 EQITSSVQNNTDNAIQANRLSASASDIAGRGGDMVEQVVQAMNAINSSSRKVVEIISVID 180 E++TS V+ N DNA QA++L+ +ASD+A RGG++V QVVQ M IN SS+K+ +II VI+ Sbjct: 391 EELTSIVKQNADNARQASQLAVTASDVATRGGNVVGQVVQTMGGINESSKKIADIIGVIE 450 Query: 181 GIAFQTNILALNAAVEATRAGEQGRGFAVVA 211 IAFQTNILALNAAVEA RAGEQGRGFAVVA Sbjct: 451 SIAFQTNILALNAAVEAARAGEQGRGFAVVA 481 >B2U6I7.1 B2U6I7_RALPJ Methyl-accepting chemotaxis sensory transducer with Cache sensor Length = 609 Score = 245 bits (625), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 129/211 (61%), Positives = 164/211 (77%), Gaps = 8/211 (3%) Query: 1 VLGASAVAALLLAALSTLVSSVATARSFTRLSRVRDAMDVIASGTGDLTQRLPVTGRDEV 60 ++G + VAAL++ A+ TAR+F RLS +RDAMD I SG+GDLT+RLP G DEV Sbjct: 288 LVGVAIVAALIVGAM--------TARAFRRLSMIRDAMDDIGSGSGDLTKRLPSDGEDEV 339 Query: 61 AQIASSFNRFVDKIEHVLLEIRDSSRTIHMASRDIASGNLDLSSRTEAQASSLEETAAAM 120 AQIA SFN F DK+ V+ +IR S ++ A+++IA+GN DLS RTE QASSLEETA++M Sbjct: 340 AQIARSFNAFADKLTAVMQQIRLGSDSVRSAAQEIAAGNADLSQRTEEQASSLEETASSM 399 Query: 121 EQITSSVQNNTDNAIQANRLSASASDIAGRGGDMVEQVVQAMNAINSSSRKVVEIISVID 180 E++TS V+ N DNA QA++L+ +ASD+A RGG++V QVVQ M IN SS+K+ +II VI+ Sbjct: 400 EELTSIVKQNADNARQASQLAVTASDVATRGGNVVGQVVQTMGGINESSKKIADIIGVIE 459 Query: 181 GIAFQTNILALNAAVEATRAGEQGRGFAVVA 211 IAFQTNILALNAAVEA RAGEQGRGFAVVA Sbjct: 460 SIAFQTNILALNAAVEAARAGEQGRGFAVVA 490 >D8N785.1 D8N785_RALSO Putative methyl-accepting chemotaxis protein transmembrane receptor Length = 600 Score = 244 bits (623), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 126/188 (67%), Positives = 151/188 (80%) Query: 24 TARSFTRLSRVRDAMDVIASGTGDLTQRLPVTGRDEVAQIASSFNRFVDKIEHVLLEIRD 83 TAR+F RLS +RDAMD I SG+GDLT+RLP GRDEVAQIA SFN F DK+ VL +IR Sbjct: 294 TARAFRRLSMIRDAMDDIGSGSGDLTKRLPADGRDEVAQIARSFNAFADKLTAVLQQIRL 353 Query: 84 SSRTIHMASRDIASGNLDLSSRTEAQASSLEETAAAMEQITSSVQNNTDNAIQANRLSAS 143 S ++ A+++IA+GN DLS RTE QASSLEETA++ME++TS V+ N DNA QA+ L+ S Sbjct: 354 GSDSVRSAAQEIAAGNADLSQRTEEQASSLEETASSMEELTSIVKQNADNARQASSLAVS 413 Query: 144 ASDIAGRGGDMVEQVVQAMNAINSSSRKVVEIISVIDGIAFQTNILALNAAVEATRAGEQ 203 ASD+A RGG +V QVVQ M IN SS+K+ +II VI+ IAFQTNILALNAAVEA RAGEQ Sbjct: 414 ASDVATRGGSVVGQVVQTMGGINESSKKIADIIGVIESIAFQTNILALNAAVEAARAGEQ 473 Query: 204 GRGFAVVA 211 GRGFAVVA Sbjct: 474 GRGFAVVA 481