BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0288.p         (121 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IWN5.1 D8IWN5_HERSS EAL domain containing protein                   182   1e-44
B2T9B2.1 B2T9B2_BURPP Diguanylate cyclase/phosphodiesterase with...   177   4e-43
Q141P4.1 Q141P4_BURXL Putative diguanylate cyclase (GGDEF)/ phos...   155   2e-36
D5NGA1.1 D5NGA1_9BURK Diguanylate cyclase/phosphodiesterase with...   150   8e-35
B2JN77.1 B2JN77_BURP8 Diguanylate cyclase/phosphodiesterase with...   148   3e-34

>D8IWN5.1 D8IWN5_HERSS EAL domain containing protein
          Length = 1036

 Score =  182 bits (463), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 89/107 (83%), Positives = 96/107 (89%)

Query: 2   LDSPYQLGEVEYRTTASVGATVFRGRQASIDELLKQADLAMYKSKETGRNAISFFDPAMQ 61
           L S YQL +VEYRTTAS+GATVF GR AS+DEL+KQADLAMYK+KETGRNA+ FFDPAMQ
Sbjct: 711 LGSTYQLDDVEYRTTASIGATVFLGRAASVDELMKQADLAMYKAKETGRNALRFFDPAMQ 770

Query: 62  TVVLERAALEAGLRKAIDDGQLVLHYQAQVVEGGRVTGAEVLVRWQH 108
           T VLERA LEAGLRKAID  QL+LHYQ QVVEGGRVTGAEVLVRWQH
Sbjct: 771 TAVLERATLEAGLRKAIDGNQLLLHYQPQVVEGGRVTGAEVLVRWQH 817


>B2T9B2.1 B2T9B2_BURPP Diguanylate cyclase/phosphodiesterase with PAS/PAC and
           Chase sensor(S)
          Length = 1037

 Score =  177 bits (449), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 87/108 (80%), Positives = 96/108 (88%), Gaps = 1/108 (0%)

Query: 1   VLDSPYQLGEVEYRTTASVGATVFRGRQASIDELLKQADLAMYKSKETGRNAISFFDPAM 60
           VL SPY LG++EYRT+AS+GATVFRG QASIDELLKQADLAMYKSKE GRNA+ FFDP M
Sbjct: 709 VLGSPYHLGKIEYRTSASIGATVFRGHQASIDELLKQADLAMYKSKERGRNAVRFFDPDM 768

Query: 61  QTVVLERAALEAGLRKAIDDGQLVLHYQAQVVEGGRVTGAEVLVRWQH 108
           QTVV++RAALEAGLR AI+D Q +LHYQAQVV G RVTGAE LVRWQH
Sbjct: 769 QTVVVQRAALEAGLRNAIEDNQFLLHYQAQVV-GTRVTGAEALVRWQH 815


>Q141P4.1 Q141P4_BURXL Putative diguanylate cyclase (GGDEF)/
           phosphodiesterase (EAL) with PAS/PAC and Chase sensors
          Length = 929

 Score =  155 bits (392), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/108 (67%), Positives = 86/108 (79%)

Query: 1   VLDSPYQLGEVEYRTTASVGATVFRGRQASIDELLKQADLAMYKSKETGRNAISFFDPAM 60
           VL   Y+L  V++R+TAS+G TVF G Q S DEL KQADLAMYKSKE GRNA+ FFDPAM
Sbjct: 586 VLGRAYELNGVQFRSTASIGVTVFNGEQTSTDELFKQADLAMYKSKERGRNAMCFFDPAM 645

Query: 61  QTVVLERAALEAGLRKAIDDGQLVLHYQAQVVEGGRVTGAEVLVRWQH 108
           QT VL+RA LE GLR AI++ + VLHYQAQVV+G  +TGAE LVRW+H
Sbjct: 646 QTTVLKRAELEVGLRSAIEENRFVLHYQAQVVDGDHITGAEALVRWEH 693


>D5NGA1.1 D5NGA1_9BURK Diguanylate cyclase/phosphodiesterase with PAS/PAC and
           Chase sensor(S)
          Length = 932

 Score =  150 bits (378), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 71/108 (65%), Positives = 84/108 (77%)

Query: 1   VLDSPYQLGEVEYRTTASVGATVFRGRQASIDELLKQADLAMYKSKETGRNAISFFDPAM 60
           VL   Y+L  V++R+TAS+G TVF   Q S DEL KQADLAMYKSKE GRNA+ FFDPAM
Sbjct: 589 VLGRAYELNGVQFRSTASIGVTVFDAEQTSTDELFKQADLAMYKSKERGRNAMCFFDPAM 648

Query: 61  QTVVLERAALEAGLRKAIDDGQLVLHYQAQVVEGGRVTGAEVLVRWQH 108
           QT VL+RA LE GL  AI++ + VLHYQAQVV+G  +TGAE LVRW+H
Sbjct: 649 QTTVLKRAELEVGLCNAIEENRFVLHYQAQVVDGDHITGAEALVRWEH 696


>B2JN77.1 B2JN77_BURP8 Diguanylate cyclase/phosphodiesterase with PAS/PAC and
           Chase sensor(S)
          Length = 915

 Score =  148 bits (373), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 80/107 (74%), Positives = 92/107 (85%)

Query: 2   LDSPYQLGEVEYRTTASVGATVFRGRQASIDELLKQADLAMYKSKETGRNAISFFDPAMQ 61
           L  PY L   E+RTTAS+GAT+F G + SIDELLKQ+DLAMYKSKE+GRNAI FFDPAMQ
Sbjct: 587 LSRPYYLAGTEFRTTASIGATLFTGHETSIDELLKQSDLAMYKSKESGRNAICFFDPAMQ 646

Query: 62  TVVLERAALEAGLRKAIDDGQLVLHYQAQVVEGGRVTGAEVLVRWQH 108
           TVV+ERAALEA LR+AID+ QL++HYQAQV+ G RVTGAE LVRWQH
Sbjct: 647 TVVMERAALEAALRRAIDEDQLLVHYQAQVLNGNRVTGAEALVRWQH 693