BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0274.p         (151 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IUB7.1 D8IUB7_HERSS Two component response regulator protein        114   7e-24
A1K5F6.1 A1K5F6_AZOSB Probable response regulator                      88   5e-16
C4KBU4.1 C4KBU4_THASP Response regulator receiver modulated digu...    83   2e-14
D9SIB0.1 D9SIB0_GALCS Response regulator receiver modulated digu...    80   7e-14
D8INS8.1 D8INS8_HERSS Regulator of the two-component system protein    78   4e-13

>D8IUB7.1 D8IUB7_HERSS Two component response regulator protein
          Length = 310

 Score =  114 bits (284), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 56/136 (41%), Positives = 81/136 (59%)

Query: 14  KLRDAEKAAFGYTHLDLAAAMMQDWSIPRLFCEAVLHHKAPSQSGLDEESRHLRLAQMLH 73
           +LR  E+ +FG+ HL LAAAMMQDW  PR+FCEAVLHH+ P+ SGL+E+ R  ++ ++L 
Sbjct: 174 QLRVQERESFGFDHLALAAAMMQDWHFPRIFCEAVLHHRDPAASGLEEDDRQQKVTRLLE 233

Query: 74  VAGIIADYCVAPEGARVQALQALLDAGAPLNGEVDHVIALCDRVGRDWMEWSSMVNISAQ 133
           +AG +AD C A +  R   L  LL  G      V  +  +C RV  DW +W +++ +  +
Sbjct: 234 LAGCVADVCTASDAQRAALLPRLLQLGQHFALPVSSLEYVCGRVSWDWSDWGALLKVPTR 293

Query: 134 ALPPTRDVLAQLREQS 149
            L      LA   EQ+
Sbjct: 294 VLREIGPELAAAAEQT 309


>A1K5F6.1 A1K5F6_AZOSB Probable response regulator
          Length = 656

 Score = 87.8 bits (216), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 75/137 (54%), Gaps = 4/137 (2%)

Query: 14  KLRDAEKAAFGYTHLDLAAAMMQDWSIPRLFCEAVLHHKAPSQSGLDEESRHLRLAQMLH 73
           +L D E+ AF  TH +L+AAM+ DW +P +F + V+  +   ++    ESR  +L + L 
Sbjct: 174 RLFDLEQQAFAMTHRELSAAMLVDWGLPPIFTQPVMFFEQADKATFAAESREAQLMECLG 233

Query: 74  VAGIIADYCVAPEGARVQALQALLDAGAPLNGEVDHVIALCDRVGRDWMEWSSMVNISAQ 133
           +A  +A+ C+AP   +   +  +L   A L    +   A C+R+GR+WMEW  ++ +   
Sbjct: 234 LARTLAELCLAPSVEQTSMMPGVLKQAAALGLNKEDFAAACERIGREWMEWGKLLQLETL 293

Query: 134 ALPPTRDVLAQLREQSG 150
           A P   D++    E+SG
Sbjct: 294 APPQFSDLI----ERSG 306


>C4KBU4.1 C4KBU4_THASP Response regulator receiver modulated diguanylate
           cyclase
          Length = 642

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 61/118 (51%)

Query: 19  EKAAFGYTHLDLAAAMMQDWSIPRLFCEAVLHHKAPSQSGLDEESRHLRLAQMLHVAGII 78
           E  AF   H +L AAM+ DW +P    + V  H+ P  +G  E+SR   + Q L +A  +
Sbjct: 180 EDQAFAMNHRELGAAMLADWGVPDALVQPVRFHEQPELAGYAEDSREAGIVQCLVLARAV 239

Query: 79  ADYCVAPEGARVQALQALLDAGAPLNGEVDHVIALCDRVGRDWMEWSSMVNISAQALP 136
           A  C+AP+   V+ +  +L     L       ++LC+RVGRDW EW  ++ I  +  P
Sbjct: 240 AQLCLAPDSEHVRLMAPMLRLAGRLGLGRGEFVSLCERVGRDWAEWGKLLQIRTEDAP 297


>D9SIB0.1 D9SIB0_GALCS Response regulator receiver modulated diguanylate
           cyclase
          Length = 632

 Score = 80.5 bits (197), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 68/130 (52%)

Query: 13  EKLRDAEKAAFGYTHLDLAAAMMQDWSIPRLFCEAVLHHKAPSQSGLDEESRHLRLAQML 72
           + L +AE AAFG  H  + A M+ DW +P+LF E  L+ + P  S   E  R+ RL Q++
Sbjct: 167 DNLTEAEHAAFGIDHNQITAGMLADWGMPKLFQEISLYIERPEASEFHEGERNWRLLQLM 226

Query: 73  HVAGIIADYCVAPEGARVQALQALLDAGAPLNGEVDHVIALCDRVGRDWMEWSSMVNISA 132
           H +  +A  C A    R + +  L+     +  E   +I + DRV     EWS+++ I  
Sbjct: 227 HFSDRLAAVCTAEASERYRLIPRLMLLATRVGIESGTLIEIGDRVIASLREWSALLGIFV 286

Query: 133 QALPPTRDVL 142
            ALPP  ++L
Sbjct: 287 PALPPFEEML 296


>D8INS8.1 D8INS8_HERSS Regulator of the two-component system protein
          Length = 317

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 63/116 (54%)

Query: 16  RDAEKAAFGYTHLDLAAAMMQDWSIPRLFCEAVLHHKAPSQSGLDEESRHLRLAQMLHVA 75
           R  E++ FG+ HL++AAA+MQDW IP LFC+AVLH++ P   G    +R   +   LH+A
Sbjct: 176 RAMEQSLFGFNHLNIAAALMQDWKIPDLFCDAVLHYETPVVIGEIAATRQDEIVWTLHLA 235

Query: 76  GIIADYCVAPEGARVQALQALLDAGAPLNGEVDHVIALCDRVGRDWMEWSSMVNIS 131
             +A+    P      AL     A A L      ++ L  + G+DW EW+  + I+
Sbjct: 236 QAMAELGCGPAQQAQAALARAGTALAQLQLAPHDLLVLYQQAGQDWQEWTQTMRIA 291