BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0272.p (306 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8ITS9.1 D8ITS9_HERSS LysR family transcription regulator protein 486 e-135 Q7WL89.1 Q7WL89_BORBR Putative LysR-family transcriptional activ... 310 2e-82 Q7VWZ8.1 Q7VWZ8_BORPE Putative LysR-family transcriptional activ... 310 2e-82 Q7W7U9.1 Q7W7U9_BORPA Putative LysR-family transcriptional activ... 305 6e-81 Q2KXC5.1 Q2KXC5_BORA1 LysR-family transcriptional regulator 301 6e-80 >D8ITS9.1 D8ITS9_HERSS LysR family transcription regulator protein Length = 301 Score = 486 bits (1251), Expect = e-135, Method: Compositional matrix adjust. Identities = 234/294 (79%), Positives = 259/294 (88%) Query: 1 MDIRALRYFSETVRLNSFSRAADALHVTQSTVSKMVRQLEDEIGAPLLIRAGRSLQLTDT 60 MDIRALRYF+ETVR +SFSRAADALHVTQSTVSKMVRQLE+E+ APLLIR GR LQLTDT Sbjct: 1 MDIRALRYFTETVRHSSFSRAADALHVTQSTVSKMVRQLEEEVDAPLLIRDGRRLQLTDT 60 Query: 61 GRVVYEQAQQILAGVQRLNTEVNNTRNLRQGHLEIGIPPMVNILCTPVLKAFRERHPDIA 120 GRVVYEQ QQILA +QRL+ EV +T+ LR G LEIGIPPM+NILCTPVLKAFRERHPDIA Sbjct: 61 GRVVYEQGQQILAAMQRLHAEVRDTKALRSGRLEIGIPPMINILCTPVLKAFRERHPDIA 120 Query: 121 ITLLEDTGPQIEQRVVAGTLEIGMTVLPIAPELELEMTPVAAYPIWAVAQAGRFQKNRST 180 + L EDTGPQIEQRV G LEIGMTVLP PEL LE PVA+YP+WAVAQAG FQKNR++ Sbjct: 121 VVLQEDTGPQIEQRVANGELEIGMTVLPADPELGLETLPVASYPMWAVAQAGSFQKNRAS 180 Query: 181 LPCRALKDMPLVLLNNEFGLTRTLRNMFRDTGIAPEVAAQSGQWDWLVAMALAGMGVALL 240 L C L MPLVLLNNEFGLTR+LR +FR+ GI PE+ AQS QWDWLVAMALAGMG ALL Sbjct: 181 LRCAQLDGMPLVLLNNEFGLTRSLRGVFREHGIKPEIVAQSAQWDWLVAMALAGMGTALL 240 Query: 241 PEPFIHRLASDQLQSVRLVEPEVQWQVAYVTRGGYLSHAARAWLALSSELFAGG 294 PEPFIHRLA+ QLQ+VRLVEPEVQW+VAYVTRGGYLSHAA AW+A+S++LFAGG Sbjct: 241 PEPFIHRLATQQLQAVRLVEPEVQWKVAYVTRGGYLSHAAHAWMAVSAQLFAGG 294 >Q7WL89.1 Q7WL89_BORBR Putative LysR-family transcriptional activator Length = 303 Score = 310 bits (794), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 154/298 (51%), Positives = 206/298 (69%), Gaps = 1/298 (0%) Query: 1 MDIRALRYFSETVRLNSFSRAADALHVTQSTVSKMVRQLEDEIGAPLLIRAGRSLQLTDT 60 MD+RALRYF ETVR SF++AA AL VTQSTVSKM+RQLEDE+G PLLIR G + + TDT Sbjct: 1 MDVRALRYFVETVRTASFTQAARALFVTQSTVSKMIRQLEDEVGTPLLIRDGHTARPTDT 60 Query: 61 GRVVYEQAQQILAGVQRLNTEVNNTRNLRQGHLEIGIPPMVNILCTPVLKAFRERHPDIA 120 GR+VYE+ IL +++L+ EV +L++G LE+GIPPM+N+L TPV+K FRERHP I Sbjct: 61 GRIVYERGLHILGAMRQLDAEVREAVDLQRGELEVGIPPMINLLFTPVVKRFRERHPHIR 120 Query: 121 ITLLEDTGPQIEQRVVAGTLEIGMTVLPIAPELELEMTPVAAYPIWAVAQAGRFQKNRST 180 ++L EDTG +E+ V AG LE+G TVLPI L+ T +Y +W + ++ Sbjct: 121 LSLREDTGQAVERLVAAGELEVGATVLPIQDPGPLQATRFGSYALWVIGPPAAAWAGKTA 180 Query: 181 LPCRALKDMPLVLLNNEFGLTRTLRNMFRDTGIAPEVAAQSGQWDWLVAMALAGMGVALL 240 LP AL+D+PL+L ++F LTR LR G AP +AAQS WD+L AMA A +GVALL Sbjct: 181 LPLTALRDLPLLLPTDDFALTRRLRQACAQAGFAPRIAAQSAHWDFLAAMASADLGVALL 240 Query: 241 PEPFIHRLASDQLQSVRLVEPEVQWQVAYV-TRGGYLSHAARAWLALSSELFAGGPPA 297 PEP + RL + L + RL + +QW++ ++ R YLSHAARAWL +++E+ G PA Sbjct: 241 PEPLVQRLKTRGLSTARLAKAGLQWEIGHIRVRDRYLSHAARAWLEVATEVLGNGQPA 298 >Q7VWZ8.1 Q7VWZ8_BORPE Putative LysR-family transcriptional activator Length = 303 Score = 310 bits (794), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 154/298 (51%), Positives = 206/298 (69%), Gaps = 1/298 (0%) Query: 1 MDIRALRYFSETVRLNSFSRAADALHVTQSTVSKMVRQLEDEIGAPLLIRAGRSLQLTDT 60 MD+RALRYF ETVR SF++AA AL VTQSTVSKM+RQLEDE+G PLLIR G + + TDT Sbjct: 1 MDVRALRYFVETVRTASFTQAARALFVTQSTVSKMIRQLEDEVGTPLLIRDGHTARPTDT 60 Query: 61 GRVVYEQAQQILAGVQRLNTEVNNTRNLRQGHLEIGIPPMVNILCTPVLKAFRERHPDIA 120 GR+VYE+ IL +++L+ EV +L++G LE+GIPPM+N+L TPV+K FRERHP I Sbjct: 61 GRIVYERGLHILGAMRQLDAEVREAVDLQRGELEVGIPPMINLLFTPVVKRFRERHPHIR 120 Query: 121 ITLLEDTGPQIEQRVVAGTLEIGMTVLPIAPELELEMTPVAAYPIWAVAQAGRFQKNRST 180 ++L EDTG +E+ V AG LE+G TVLPI L+ T +Y +W + ++ Sbjct: 121 LSLREDTGQAVERLVAAGELEVGATVLPIQDPGPLQATRFGSYALWVIGPPAAAWAGKTA 180 Query: 181 LPCRALKDMPLVLLNNEFGLTRTLRNMFRDTGIAPEVAAQSGQWDWLVAMALAGMGVALL 240 LP AL+D+PL+L ++F LTR LR G AP +AAQS WD+L AMA A +GVALL Sbjct: 181 LPLTALRDLPLLLPTDDFALTRRLRQACAQAGFAPRIAAQSAHWDFLAAMASADLGVALL 240 Query: 241 PEPFIHRLASDQLQSVRLVEPEVQWQVAYV-TRGGYLSHAARAWLALSSELFAGGPPA 297 PEP + RL + L + RL + +QW++ ++ R YLSHAARAWL +++E+ G PA Sbjct: 241 PEPLVQRLKTRGLSTARLAKAGLQWEIGHIRVRDRYLSHAARAWLEVATEVLGNGQPA 298 >Q7W7U9.1 Q7W7U9_BORPA Putative LysR-family transcriptional activator Length = 303 Score = 305 bits (781), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 152/298 (51%), Positives = 204/298 (68%), Gaps = 1/298 (0%) Query: 1 MDIRALRYFSETVRLNSFSRAADALHVTQSTVSKMVRQLEDEIGAPLLIRAGRSLQLTDT 60 MD+RALRYF ETVR SF++AA AL VTQSTVSKM+ QLEDE+G PLLIR G + + TDT Sbjct: 1 MDVRALRYFVETVRTASFTQAARALFVTQSTVSKMICQLEDEVGTPLLIRDGHTARPTDT 60 Query: 61 GRVVYEQAQQILAGVQRLNTEVNNTRNLRQGHLEIGIPPMVNILCTPVLKAFRERHPDIA 120 GR+VYE+ IL +++L+ EV +L++G LE+GIPPM+N+L TPV+K FRERHP I Sbjct: 61 GRIVYERGLHILGAMRQLDAEVREAVDLQRGELEVGIPPMINLLFTPVVKRFRERHPHIR 120 Query: 121 ITLLEDTGPQIEQRVVAGTLEIGMTVLPIAPELELEMTPVAAYPIWAVAQAGRFQKNRST 180 ++L EDTG +E+ V AG LE+G TVLPI L+ T +Y +W + ++ Sbjct: 121 LSLREDTGQAVERLVAAGELEVGATVLPIQDPGPLQATRFGSYALWVIGPPAAAWAGKTA 180 Query: 181 LPCRALKDMPLVLLNNEFGLTRTLRNMFRDTGIAPEVAAQSGQWDWLVAMALAGMGVALL 240 LP AL+D+PL+L ++F LTR LR G AP +AAQS WD+L AMA A +GVALL Sbjct: 181 LPLTALRDLPLLLPTDDFALTRRLRQACAQAGFAPRIAAQSAHWDFLAAMASADLGVALL 240 Query: 241 PEPFIHRLASDQLQSVRLVEPEVQWQVAYV-TRGGYLSHAARAWLALSSELFAGGPPA 297 PEP + RL + L + RL + +QW++ ++ R YLSH ARAWL +++E+ G PA Sbjct: 241 PEPLVQRLKTRGLSTARLAKAGLQWEIGHIRVRDRYLSHTARAWLEVATEVLGNGQPA 298 >Q2KXC5.1 Q2KXC5_BORA1 LysR-family transcriptional regulator Length = 302 Score = 301 bits (772), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 153/299 (51%), Positives = 204/299 (68%), Gaps = 3/299 (1%) Query: 1 MDIRALRYFSETVRLNSFSRAADALHVTQSTVSKMVRQLEDEIGAPLLIRAGRSLQLTDT 60 MD+RALRYFSETVR SF+ AA L VTQSTVSKM+RQLE+E+G PLLIR G + + TDT Sbjct: 1 MDVRALRYFSETVRCASFTEAARHLFVTQSTVSKMIRQLEEEVGTPLLIRDGHTARPTDT 60 Query: 61 GRVVYEQAQQILAGVQRLNTEVNNTRNLRQGHLEIGIPPMVNILCTPVLKAFRERHPDIA 120 GR+VYE++ QILA +++L+ EV +L +G LE+GIPPM+N+L PV++ FRER+P I Sbjct: 61 GRIVYERSLQILAAMRQLSAEVKEAADLERGELEVGIPPMINLLFIPVVRQFRERYPRIQ 120 Query: 121 ITLLEDTGPQIEQRVVAGTLEIGMTVLPIAPELELEMTPVAAYPIWAVAQAGRFQKNRST 180 ++L E G ++E+ V AG LE+G TVLP+A LE Y +WA+ + NR+T Sbjct: 121 LSLREGAGQEVERLVAAGELEVGATVLPVAAGGPLESRRFGLYSLWALGPSDAPWANRTT 180 Query: 181 LPCRALKDMPLVLLNNEFGLTRTLRNMFRDTGIAPEVAAQSGQWDWLVAMALAGMGVALL 240 LP AL+D+PL++ +F LTR LR G P +AAQS WD+L AMA +G+G A+L Sbjct: 181 LPLSALRDVPLLIPTEDFALTRRLRQACESAGFDPRIAAQSAHWDFLAAMASSGLGTAIL 240 Query: 241 PEPFIHRLASDQLQSVRLVEPEVQWQVAYV-TRGGYLSHAARAWLALSSELFAGGPPAT 298 PEP + RL + L + RL VQW+V ++ R YLSHAARAWL + S + PPAT Sbjct: 241 PEPLVQRLKTRGLSTARLARSGVQWEVGHIWVRDRYLSHAARAWLEICSAVLT--PPAT 297