BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0269.p         (151 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IWH3.1 D8IWH3_HERSS Two component response regulator protein        217   4e-55
B2JGJ5.1 B2JGJ5_BURP8 Response regulator receiver protein             211   4e-53
B5WRM2.1 B5WRM2_9BURK Response regulator receiver protein             208   2e-52
E8YP16.1 E8YP16_9BURK Response regulator receiver protein             207   5e-52
B2T3W6.1 B2T3W6_BURPP Response regulator receiver protein             206   6e-52

>D8IWH3.1 D8IWH3_HERSS Two component response regulator protein
          Length = 154

 Score =  217 bits (553), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 104/144 (72%), Positives = 125/144 (86%), Gaps = 2/144 (1%)

Query: 1   MADKDEVGILLVEDDDGHALLVEKNLRRAGLSNGFLRLKDGQEALDYFFNGEGVPGREKF 60
           MA +  V I+LVEDDDGHA+LVEKNLRRAGL NGF+RL+DGQEALDY F+ +    R + 
Sbjct: 1   MATEQSVNIILVEDDDGHAVLVEKNLRRAGLVNGFVRLRDGQEALDYLFDPQR--SRTEL 58

Query: 61  ESLVVLLDVNMPRVSGVDVLKRLKENEVTAAIPIIMLTTTDDPREIERCYDYGCNLYITK 120
           + LVVLLDVNMPRV+GV+VL+RLK + V +AIP+IMLTTTDDPREI RCY+YGCN+YITK
Sbjct: 59  QQLVVLLDVNMPRVNGVEVLRRLKADPVLSAIPVIMLTTTDDPREIGRCYEYGCNVYITK 118

Query: 121 PVEYEAFIEAVRRLGFFLQIIKVP 144
           PVEYE FIEA+RRLGFFLQ++K+P
Sbjct: 119 PVEYEDFIEAIRRLGFFLQVVKLP 142


>B2JGJ5.1 B2JGJ5_BURP8 Response regulator receiver protein
          Length = 162

 Score =  211 bits (536), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 101/150 (67%), Positives = 124/150 (82%), Gaps = 7/150 (4%)

Query: 6   EVGILLVEDDDGHALLVEKNLRRAGLSNGFLRLKDGQEALDYFFN-------GEGVPGRE 58
            VGI+LVEDDDGHA LVE+NLRRAG+SNGF+RL DGQ+ALDYFF         +G P R+
Sbjct: 9   SVGIVLVEDDDGHATLVERNLRRAGISNGFVRLADGQQALDYFFGEPCAGDRTDGRPSRD 68

Query: 59  KFESLVVLLDVNMPRVSGVDVLKRLKENEVTAAIPIIMLTTTDDPREIERCYDYGCNLYI 118
           +  + VVLLD+ MPRV G +VL+RLK +  TA++P+I+LTTTDDPREIERCY+ GCN+YI
Sbjct: 69  ELANYVVLLDLKMPRVDGFEVLRRLKASPSTASMPVIVLTTTDDPREIERCYELGCNVYI 128

Query: 119 TKPVEYEAFIEAVRRLGFFLQIIKVPPVGR 148
           TKPVEY+AFIEAVRRLGFFLQ++K+PP  R
Sbjct: 129 TKPVEYDAFIEAVRRLGFFLQVVKLPPGQR 158


>B5WRM2.1 B5WRM2_9BURK Response regulator receiver protein
          Length = 163

 Score =  208 bits (530), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 101/161 (62%), Positives = 122/161 (75%), Gaps = 11/161 (6%)

Query: 1   MADKDEVGILLVEDDDGHALLVEKNLRRAGLSNGFLRLKDGQEALDYFF----------- 49
           M     V I+L+EDDDGHA LVE+NLRRAG+SNGF+R +DGQ+ALDYFF           
Sbjct: 1   MNHAQTVSIVLIEDDDGHATLVERNLRRAGISNGFMRFRDGQQALDYFFGPAPAQPLTDA 60

Query: 50  NGEGVPGREKFESLVVLLDVNMPRVSGVDVLKRLKENEVTAAIPIIMLTTTDDPREIERC 109
           +G   P RE   + VVLLD+ MPRV G +VL+RLKE   TAA+P+I+LTTTDDPREI RC
Sbjct: 61  DGHPYPPRENLANFVVLLDLKMPRVDGFEVLRRLKEAPETAAVPVIVLTTTDDPREIARC 120

Query: 110 YDYGCNLYITKPVEYEAFIEAVRRLGFFLQIIKVPPVGRGA 150
           Y+ GCN+YI KPVEY+AFIEAVRRLGFFLQ++K+PP  R A
Sbjct: 121 YELGCNVYICKPVEYDAFIEAVRRLGFFLQVVKLPPGHRLA 161


>E8YP16.1 E8YP16_9BURK Response regulator receiver protein
          Length = 161

 Score =  207 bits (526), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 100/159 (62%), Positives = 124/159 (77%), Gaps = 8/159 (5%)

Query: 1   MADKDEVGILLVEDDDGHALLVEKNLRRAGLSNGFLRLKDGQEALDYFFNGEG------- 53
           M+  + V I+L+EDDDGHA LVE+NLRRAG+SNGF+R +DGQ+ALDYFF GE        
Sbjct: 1   MSHGETVSIVLIEDDDGHATLVERNLRRAGISNGFVRFRDGQQALDYFFGGEAGGESAPG 60

Query: 54  -VPGREKFESLVVLLDVNMPRVSGVDVLKRLKENEVTAAIPIIMLTTTDDPREIERCYDY 112
             P  E   + VVLLD+ MPRV G +VL+RLKE+  TA +P+I+LTTTDDPREI RCY+ 
Sbjct: 61  AHPQPEDLRNSVVLLDLKMPRVDGFEVLRRLKESPQTAPVPVIVLTTTDDPREIARCYEL 120

Query: 113 GCNLYITKPVEYEAFIEAVRRLGFFLQIIKVPPVGRGAA 151
           GCN+YITKPVEY+AFIEAVRRLGFFLQ++K+P   R A+
Sbjct: 121 GCNVYITKPVEYDAFIEAVRRLGFFLQVVKLPSGHRFAS 159


>B2T3W6.1 B2T3W6_BURPP Response regulator receiver protein
          Length = 169

 Score =  206 bits (525), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 102/168 (60%), Positives = 124/168 (73%), Gaps = 17/168 (10%)

Query: 1   MADKDEVGILLVEDDDGHALLVEKNLRRAGLSNGFLRLKDGQEALDYFFN---------- 50
           M   + V I+L+EDDDGHA LVE+NLRRAG+SNGF+R +DGQ+ALDYFF           
Sbjct: 1   MNHGETVSIVLIEDDDGHATLVERNLRRAGISNGFVRFRDGQQALDYFFGPAPSPADAAA 60

Query: 51  -------GEGVPGREKFESLVVLLDVNMPRVSGVDVLKRLKENEVTAAIPIIMLTTTDDP 103
                     VP RE   + VVLLD+ MPRV G +VL+RLKE+  TAA+P+I+LTTTDDP
Sbjct: 61  GCAAEPAQSAVPAREDLLNFVVLLDLKMPRVDGFEVLRRLKESPQTAAVPVIVLTTTDDP 120

Query: 104 REIERCYDYGCNLYITKPVEYEAFIEAVRRLGFFLQIIKVPPVGRGAA 151
           REI RCY+ GCN+YITKPVEY+AFIEAVRRLGFFLQ++K+P   R AA
Sbjct: 121 REIARCYELGCNVYITKPVEYDAFIEAVRRLGFFLQVVKLPSGHRLAA 168