BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0264.p         (143 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A6T3D4.1 A6T3D4_JANMA Excinuclease ABC subunit A                      179   2e-43
A4G9M0.1 A4G9M0_HERAR UvrABC system protein A (UvrA protein) (Ex...   177   4e-43
D8ISL9.1 D8ISL9_HERSS Excinuclease ATPase subunit protein             174   3e-42
A4JHX2.1 A4JHX2_BURVG Excinuclease ABC subunit A                      152   1e-35
B1T5T9.1 B1T5T9_9BURK Excinuclease ABC, A subunit                     152   2e-35

>A6T3D4.1 A6T3D4_JANMA Excinuclease ABC subunit A
          Length = 954

 Score =  179 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 79/94 (84%), Positives = 88/94 (93%)

Query: 1   MLSNLAAFYEFDIDIPFEQLPEKSQQVILYGSGRQTIPFTYVNERGRTVIREHTFEGVVT 60
           MLSNLA +Y+FDID+PFE+LPE +QQ +L+GSG+Q IPFTYVNE+GRTVIREHTFEGVV 
Sbjct: 324 MLSNLAEYYDFDIDMPFEKLPEAAQQAVLFGSGKQNIPFTYVNEKGRTVIREHTFEGVVN 383

Query: 61  NLQRRYRETDSMAVKEELAKFINEKECPSCAGAR 94
           NLQRRYRETDSMAVKEELAKFINEKECPSC GAR
Sbjct: 384 NLQRRYRETDSMAVKEELAKFINEKECPSCQGAR 417


>A4G9M0.1 A4G9M0_HERAR UvrABC system protein A (UvrA protein) (Excinuclease
           ABC subunit A)
          Length = 954

 Score =  177 bits (450), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 79/94 (84%), Positives = 87/94 (92%)

Query: 1   MLSNLAAFYEFDIDIPFEQLPEKSQQVILYGSGRQTIPFTYVNERGRTVIREHTFEGVVT 60
           MLSNLA FY+FDID+PFE+LPE +QQ +L+GSG+Q IPFTYVNE+GRTVIREH FEGVV 
Sbjct: 324 MLSNLAEFYDFDIDVPFEKLPEVAQQAVLFGSGKQKIPFTYVNEKGRTVIREHEFEGVVN 383

Query: 61  NLQRRYRETDSMAVKEELAKFINEKECPSCAGAR 94
           NLQRRYRETDSMAVKEELAKFINEKECPSC GAR
Sbjct: 384 NLQRRYRETDSMAVKEELAKFINEKECPSCHGAR 417


>D8ISL9.1 D8ISL9_HERSS Excinuclease ATPase subunit protein
          Length = 952

 Score =  174 bits (442), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 76/94 (80%), Positives = 88/94 (93%)

Query: 1   MLSNLAAFYEFDIDIPFEQLPEKSQQVILYGSGRQTIPFTYVNERGRTVIREHTFEGVVT 60
           ML+++AA+Y FD+D+PFEQL +K+QQ +LYGSGRQTIPF YVNERGRTV++EHTFEGVV 
Sbjct: 324 MLTSIAAYYGFDLDVPFEQLDDKAQQAVLYGSGRQTIPFAYVNERGRTVVKEHTFEGVVN 383

Query: 61  NLQRRYRETDSMAVKEELAKFINEKECPSCAGAR 94
           NLQRRYRETDSMAVKEELAKFINEK+CPSC GAR
Sbjct: 384 NLQRRYRETDSMAVKEELAKFINEKQCPSCHGAR 417


>A4JHX2.1 A4JHX2_BURVG Excinuclease ABC subunit A
          Length = 961

 Score =  152 bits (385), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 68/98 (69%), Positives = 81/98 (82%)

Query: 1   MLSNLAAFYEFDIDIPFEQLPEKSQQVILYGSGRQTIPFTYVNERGRTVIREHTFEGVVT 60
           ML +LAAFYEFDID  FE LPEK ++V+LYGSG+QTIPF+Y+NERGRT IREH FEG++ 
Sbjct: 328 MLQSLAAFYEFDIDAAFEDLPEKIRKVLLYGSGKQTIPFSYINERGRTTIREHVFEGIIP 387

Query: 61  NLQRRYRETDSMAVKEELAKFINEKECPSCAGARXINE 98
           NL+RRYRETDS AV+EELAK+ N + CPSC G R   E
Sbjct: 388 NLERRYRETDSAAVREELAKYQNNQPCPSCDGTRLRRE 425


>B1T5T9.1 B1T5T9_9BURK Excinuclease ABC, A subunit
          Length = 961

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 67/98 (68%), Positives = 82/98 (83%)

Query: 1   MLSNLAAFYEFDIDIPFEQLPEKSQQVILYGSGRQTIPFTYVNERGRTVIREHTFEGVVT 60
           ML +LAAFYEFDID  FE LPEK ++V+L+GSG+QTIPF+Y+NERGRT IREH FEG++ 
Sbjct: 328 MLQSLAAFYEFDIDAAFEDLPEKIRKVLLFGSGKQTIPFSYINERGRTTIREHVFEGIIP 387

Query: 61  NLQRRYRETDSMAVKEELAKFINEKECPSCAGARXINE 98
           NL+RRYRETDS+AV+EELAK+ N + CPSC G R   E
Sbjct: 388 NLERRYRETDSVAVREELAKYQNNQPCPSCEGTRLRRE 425