BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0242.p         (169 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

O29626.1 LEUD1_ARCFU 3-isopropylmalate dehydratase small subunit...   137   7e-31
A0B553.1 A0B553_METTP 3-isopropylmalate dehydratase, small subun...   135   3e-30
D2RD58.1 D2RD58_ARCPA 3-isopropylmalate dehydratase, small subunit    135   3e-30
Q9UZ06.1 LEUD1_PYRAB 3-isopropylmalate dehydratase small subunit...   135   3e-30
Q8U2A0.1 LEUD1_PYRFU 3-isopropylmalate dehydratase small subunit...   133   7e-30

>O29626.1 LEUD1_ARCFU 3-isopropylmalate dehydratase small subunit 1
           EC=4.2.1.33
          Length = 161

 Score =  137 bits (344), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 66/157 (42%), Positives = 99/157 (63%), Gaps = 3/157 (1%)

Query: 10  GRAWKFSSDISSDQLISARHVFEFDPRMLRHHLLAEVRPEFAQQAQPGDVIVAGRNFAHG 69
           GRAWKF  DI +D +I  +++   +P  L  H+   +RPEFA++ + GD +VAG NF  G
Sbjct: 2   GRAWKFGDDIDTDVIIQGKYLVINEPEELAKHVFENLRPEFAKEVKKGDFVVAGENFGCG 61

Query: 70  SNHSHPFLAMKALGV-GLLVRSLSRGPFRLAIFMGVPVLMAGADVLDAIDDGDRLDIDFS 128
           S+  H  LA+KA G+  ++ +S +R  FR AI +G+ VL       D I+DGD L++D+ 
Sbjct: 62  SSREHAPLALKATGIEAVIAKSYARIFFRNAINIGLRVLECKE--TDKIEDGDELEVDYE 119

Query: 129 RGAIFNATSGKQMQVEPLAPFLQEIVNAGGGLEFVKS 165
           +G I+N T G++  + PL  FL+EI+  GG +EF KS
Sbjct: 120 KGVIYNKTKGEEYPINPLPDFLKEILEKGGLVEFAKS 156


>A0B553.1 A0B553_METTP 3-isopropylmalate dehydratase, small subunit
           EC=4.2.1.33
          Length = 161

 Score =  135 bits (339), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 72/159 (45%), Positives = 100/159 (62%), Gaps = 3/159 (1%)

Query: 11  RAWKFSSDISSDQLISARHVFEFDPRMLRHHLLAEVRPEFAQQAQPGDVIVAGRNFAHGS 70
           RAWKF +DI +D +I  R++   DP  L  HL   +RPEFA+  + GD+IVAG NF  GS
Sbjct: 3   RAWKFGNDIDTDVIIPGRYLVINDPEELAKHLFEGIRPEFAESVRHGDIIVAGTNFGCGS 62

Query: 71  NHSHPFLAMKALGV-GLLVRSLSRGPFRLAIFMGVPVLMAGADVLDAIDDGDRLDIDFSR 129
           +  H  LA+KA GV  ++ RS +R  FR +I +G+P+L+  AD  + IDDGD + +D SR
Sbjct: 63  SREHAPLAIKAAGVEAVIARSFARIFFRNSINIGLPLLIC-ADA-EKIDDGDSVVVDISR 120

Query: 130 GAIFNATSGKQMQVEPLAPFLQEIVNAGGGLEFVKSQLT 168
           G + N +  +     PL PFLQEIV +GG L + K Q+ 
Sbjct: 121 GIVQNISKKESYPTTPLPPFLQEIVRSGGLLNYTKKQVV 159


>D2RD58.1 D2RD58_ARCPA 3-isopropylmalate dehydratase, small subunit
          Length = 159

 Score =  135 bits (339), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 63/155 (40%), Positives = 93/155 (60%), Gaps = 2/155 (1%)

Query: 10  GRAWKFSSDISSDQLISARHVFEFDPRMLRHHLLAEVRPEFAQQAQPGDVIVAGRNFAHG 69
           GRAWKF  D+ +D +I  +++   DP+ L  H+   +RPEFA+  + GD +VAG NF  G
Sbjct: 2   GRAWKFGDDVDTDAIIPGKYLVINDPKELAKHVFENIRPEFAKNVKDGDFVVAGENFGCG 61

Query: 70  SNHSHPFLAMKALGVGLLVRSLSRGPFRLAIFMGVPVLMAGADVLDAIDDGDRLDIDFSR 129
           S+  H  L++KA GV ++ +S +R  FR AI +G+P         D IDDGD L +D  R
Sbjct: 62  SSREHAPLSLKASGVYVVAKSYARIFFRNAINIGLPAFE--CKYTDKIDDGDELKLDLDR 119

Query: 130 GAIFNATSGKQMQVEPLAPFLQEIVNAGGGLEFVK 164
             I N T G++  + P+  FL+EI+  GG +EF +
Sbjct: 120 NVIVNVTKGEKYPINPVPDFLKEIIECGGLIEFCR 154


>Q9UZ06.1 LEUD1_PYRAB 3-isopropylmalate dehydratase small subunit 1
           EC=4.2.1.33
          Length = 164

 Score =  135 bits (339), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 68/159 (42%), Positives = 102/159 (64%), Gaps = 2/159 (1%)

Query: 10  GRAWKFSSDISSDQLISARHVFEFDPRMLRHHLLAEVRPEFAQQAQPGDVIVAGRNFAHG 69
           GRAWK+  +I +D +I AR++   DP+ L  H+L ++ PEF  + +PGD+IVAG NF  G
Sbjct: 5   GRAWKYGDNIDTDVIIPARYLNTSDPKELAKHVLEDLDPEFRSKMKPGDIIVAGENFGCG 64

Query: 70  SNHSHPFLAMKALGVGLLV-RSLSRGPFRLAIFMGVPVLMAGADVLDAIDDGDRLDIDFS 128
           S+  H  LA+KA GV  ++ +S +R  +R AI +G+P+L A    +D I+ GD L++DFS
Sbjct: 65  SSREHAPLAIKAAGVSCVIAKSFARIFYRNAINIGLPILEA-PQAVDRIETGDELEVDFS 123

Query: 129 RGAIFNATSGKQMQVEPLAPFLQEIVNAGGGLEFVKSQL 167
            G I N T G+  +  P   F+ EI+ AGG +E+ K +L
Sbjct: 124 SGEIRNLTKGEVYRANPFPDFIMEIIKAGGLVEWAKRRL 162


>Q8U2A0.1 LEUD1_PYRFU 3-isopropylmalate dehydratase small subunit 1
           EC=4.2.1.33
          Length = 164

 Score =  133 bits (335), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 67/161 (41%), Positives = 103/161 (63%), Gaps = 2/161 (1%)

Query: 8   SSGRAWKFSSDISSDQLISARHVFEFDPRMLRHHLLAEVRPEFAQQAQPGDVIVAGRNFA 67
           + GRAWK+  +I +D +I AR++   DP+ L  H+L ++ PEF  + +PGD+IVAG NF 
Sbjct: 3   ARGRAWKYGDNIDTDVIIPARYLNTSDPKELAQHVLEDLDPEFRYKMKPGDIIVAGENFG 62

Query: 68  HGSNHSHPFLAMKALGV-GLLVRSLSRGPFRLAIFMGVPVLMAGADVLDAIDDGDRLDID 126
            GS+  H  LA+KA GV  ++ +S +R  +R AI +G+P+L A  + ++ I+ GD ++ID
Sbjct: 63  CGSSREHAPLAIKAAGVSAVIAKSFARIFYRNAINIGLPILEA-PEAVERIETGDEIEID 121

Query: 127 FSRGAIFNATSGKQMQVEPLAPFLQEIVNAGGGLEFVKSQL 167
           FS G I N T G+     P   F+ EI+ AGG +E+ K +L
Sbjct: 122 FSTGEIRNLTKGEVYHANPFPEFIMEIIKAGGLVEWAKRRL 162