BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0229.p (314 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B9C413.1 B9C413_9BURK Transcriptional regulator, LysR family 391 e-107 B9BK08.1 B9BK08_9BURK Transcriptional regulator, LysR family 391 e-107 A9ACG6.1 A9ACG6_BURM1 Transcriptional regulator, LysR family 380 e-103 B3CZJ3.1 B3CZJ3_BURM1 LysR family transcriptional regulator 380 e-103 A8GAG3.1 A8GAG3_SERP5 Transcriptional regulator, LysR family 379 e-103 >B9C413.1 B9C413_9BURK Transcriptional regulator, LysR family Length = 300 Score = 391 bits (1004), Expect = e-107, Method: Compositional matrix adjust. Identities = 191/301 (63%), Positives = 233/301 (77%), Gaps = 3/301 (0%) Query: 13 QDLNDLYYFAQVVDHRGFAAAGRALGIPKSKLSRRIAQLEERLGARLIQRSTRSLSVTEI 72 QDLNDLY+FAQVVD++GFA A RALGIPKS LSRRIA LE RLG RL+QRSTR S+TE+ Sbjct: 2 QDLNDLYFFAQVVDYKGFAPASRALGIPKSTLSRRIAMLEARLGVRLVQRSTRRFSITEV 61 Query: 73 GQSYYEHCKAMLVEAEAAQEAVERNRAEPQGTVRLTCPVALLHGRVGVMLADFLIEHPRV 132 GQ YY HCKAMLVE EAAQ+A++R EPQG VR+TCPVA+LH R+G MLA+F+ PRV Sbjct: 62 GQRYYTHCKAMLVEVEAAQQAIDRITGEPQGIVRVTCPVAMLHARIGAMLAEFMAATPRV 121 Query: 133 TLQVESTNRRVDVVNEGIDVALRVLLPPLQDSDLVLKIFGMRHWCLAASPALLEKCRVPE 192 T+ +E+TNR VDVV EGID+A+RV PPLQDSDLV+++ G R WCL ASPAL+ R Sbjct: 122 TVHLEATNRVVDVVGEGIDLAIRVRPPPLQDSDLVMRVLGERAWCLLASPALIGD-RTVA 180 Query: 193 VPADLHRFPSMSLAIPVEQHVWHLENADGETASIRHTPRLMTDDATALKRAAAQVFGAGI 252 +PADL +PS+ QH W L+ DG A++RHTPR +TDD +L+ AA V GAGI Sbjct: 181 MPADLDGWPSLDFGPAQPQHTWQLDGPDGVHAAVRHTPRFVTDDMISLRHAA--VAGAGI 238 Query: 253 VYLPTMVVIDELRSGALVKVLPEWSPKSGIIHAVYSSRRFLLPSVRQLIDFLAKRFDELE 312 V LP M+V DELR G LV+VLPEW+PKSGIIHAV+ SRR LLP+VR L+DFLA F+ ++ Sbjct: 239 VQLPLMMVADELRRGELVRVLPEWAPKSGIIHAVFPSRRGLLPAVRALVDFLADAFERID 298 Query: 313 D 313 + Sbjct: 299 E 299 >B9BK08.1 B9BK08_9BURK Transcriptional regulator, LysR family Length = 300 Score = 391 bits (1004), Expect = e-107, Method: Compositional matrix adjust. Identities = 191/301 (63%), Positives = 233/301 (77%), Gaps = 3/301 (0%) Query: 13 QDLNDLYYFAQVVDHRGFAAAGRALGIPKSKLSRRIAQLEERLGARLIQRSTRSLSVTEI 72 QDLNDLY+FAQVVD++GFA A RALGIPKS LSRRIA LE RLG RL+QRSTR S+TE+ Sbjct: 2 QDLNDLYFFAQVVDYKGFAPASRALGIPKSTLSRRIAMLEARLGVRLVQRSTRRFSITEV 61 Query: 73 GQSYYEHCKAMLVEAEAAQEAVERNRAEPQGTVRLTCPVALLHGRVGVMLADFLIEHPRV 132 GQ YY HCKAMLVE EAAQ+A++R EPQG VR+TCPVA+LH R+G MLA+F+ PRV Sbjct: 62 GQRYYTHCKAMLVEVEAAQQAIDRITGEPQGIVRVTCPVAMLHARIGAMLAEFMAATPRV 121 Query: 133 TLQVESTNRRVDVVNEGIDVALRVLLPPLQDSDLVLKIFGMRHWCLAASPALLEKCRVPE 192 T+ +E+TNR VDVV EGID+A+RV PPLQDSDLV+++ G R WCL ASPAL+ R Sbjct: 122 TVHLEATNRVVDVVGEGIDLAIRVRPPPLQDSDLVMRVLGERAWCLLASPALIGD-RTVA 180 Query: 193 VPADLHRFPSMSLAIPVEQHVWHLENADGETASIRHTPRLMTDDATALKRAAAQVFGAGI 252 +PADL +PS+ QH W L+ DG A++RHTPR +TDD +L+ AA V GAGI Sbjct: 181 MPADLDGWPSLDFGPAQPQHTWQLDGPDGVHAAVRHTPRFVTDDMISLRHAA--VAGAGI 238 Query: 253 VYLPTMVVIDELRSGALVKVLPEWSPKSGIIHAVYSSRRFLLPSVRQLIDFLAKRFDELE 312 V LP M+V DELR G LV+VLPEW+PKSGIIHAV+ SRR LLP+VR L+DFLA F+ ++ Sbjct: 239 VQLPLMMVADELRRGELVRVLPEWAPKSGIIHAVFPSRRGLLPAVRALVDFLADAFERID 298 Query: 313 D 313 + Sbjct: 299 E 299 >A9ACG6.1 A9ACG6_BURM1 Transcriptional regulator, LysR family Length = 307 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 186/301 (61%), Positives = 230/301 (76%), Gaps = 3/301 (0%) Query: 13 QDLNDLYYFAQVVDHRGFAAAGRALGIPKSKLSRRIAQLEERLGARLIQRSTRSLSVTEI 72 QDLNDLY+FAQVVDHRGFA A RALGIPKS LSRRIA LE++LG RL+ RSTR S+T+I Sbjct: 9 QDLNDLYFFAQVVDHRGFAPASRALGIPKSTLSRRIAALEQQLGVRLVHRSTRQFSITDI 68 Query: 73 GQSYYEHCKAMLVEAEAAQEAVERNRAEPQGTVRLTCPVALLHGRVGVMLADFLIEHPRV 132 GQ YY HCKA+LVEAEAAQ+A+E+ RAEP+G +RL CPVALLH R+ MLA+F+ + PRV Sbjct: 69 GQHYYNHCKAVLVEAEAAQDAIEQMRAEPRGVIRLVCPVALLHARIAPMLAEFMAKTPRV 128 Query: 133 TLQVESTNRRVDVVNEGIDVALRVLLPPLQDSDLVLKIFGMRHWCLAASPALLEKCRVPE 192 T+ +E+TNR VDV+ EG+DVALRV PPL+DSDLV+++ G R W L ASPAL+ + + Sbjct: 129 TVHLEATNRVVDVIGEGVDVALRVRPPPLKDSDLVMRVLGERAWSLVASPALVRQHDI-A 187 Query: 193 VPADLHRFPSMSLAIPVEQHVWHLENADGETASIRHTPRLMTDDATALKRAAAQVFGAGI 252 VPADL P++ P QH W LE DG +IRH PR +TDD AL++AA V G G+ Sbjct: 188 VPADLAGCPTLDFGPPQPQHAWQLEGRDGVQTTIRHVPRFVTDDMVALRQAA--VAGVGV 245 Query: 253 VYLPTMVVIDELRSGALVKVLPEWSPKSGIIHAVYSSRRFLLPSVRQLIDFLAKRFDELE 312 V LP M+V DE+R G LV+VLP+W P+SGIIHAV+ SRR LLPSVR L+DFL F +E Sbjct: 246 VQLPMMMVSDEIRRGELVRVLPDWLPRSGIIHAVFPSRRGLLPSVRALLDFLVDAFARIE 305 Query: 313 D 313 + Sbjct: 306 E 306 >B3CZJ3.1 B3CZJ3_BURM1 LysR family transcriptional regulator Length = 300 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 186/301 (61%), Positives = 230/301 (76%), Gaps = 3/301 (0%) Query: 13 QDLNDLYYFAQVVDHRGFAAAGRALGIPKSKLSRRIAQLEERLGARLIQRSTRSLSVTEI 72 QDLNDLY+FAQVVDHRGFA A RALGIPKS LSRRIA LE++LG RL+ RSTR S+T+I Sbjct: 2 QDLNDLYFFAQVVDHRGFAPASRALGIPKSTLSRRIAALEQQLGVRLVHRSTRQFSITDI 61 Query: 73 GQSYYEHCKAMLVEAEAAQEAVERNRAEPQGTVRLTCPVALLHGRVGVMLADFLIEHPRV 132 GQ YY HCKA+LVEAEAAQ+A+E+ RAEP+G +RL CPVALLH R+ MLA+F+ + PRV Sbjct: 62 GQHYYNHCKAVLVEAEAAQDAIEQMRAEPRGVIRLVCPVALLHARIAPMLAEFMAKTPRV 121 Query: 133 TLQVESTNRRVDVVNEGIDVALRVLLPPLQDSDLVLKIFGMRHWCLAASPALLEKCRVPE 192 T+ +E+TNR VDV+ EG+DVALRV PPL+DSDLV+++ G R W L ASPAL+ + + Sbjct: 122 TVHLEATNRVVDVIGEGVDVALRVRPPPLKDSDLVMRVLGERAWSLVASPALVRQHDI-A 180 Query: 193 VPADLHRFPSMSLAIPVEQHVWHLENADGETASIRHTPRLMTDDATALKRAAAQVFGAGI 252 VPADL P++ P QH W LE DG +IRH PR +TDD AL++AA V G G+ Sbjct: 181 VPADLAGCPTLDFGPPQPQHAWQLEGRDGVQTTIRHVPRFVTDDMVALRQAA--VAGVGV 238 Query: 253 VYLPTMVVIDELRSGALVKVLPEWSPKSGIIHAVYSSRRFLLPSVRQLIDFLAKRFDELE 312 V LP M+V DE+R G LV+VLP+W P+SGIIHAV+ SRR LLPSVR L+DFL F +E Sbjct: 239 VQLPMMMVSDEIRRGELVRVLPDWLPRSGIIHAVFPSRRGLLPSVRALLDFLVDAFARIE 298 Query: 313 D 313 + Sbjct: 299 E 299 >A8GAG3.1 A8GAG3_SERP5 Transcriptional regulator, LysR family Length = 302 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 181/303 (59%), Positives = 235/303 (77%), Gaps = 2/303 (0%) Query: 11 MTQDLNDLYYFAQVVDHRGFAAAGRALGIPKSKLSRRIAQLEERLGARLIQRSTRSLSVT 70 M DLNDL+YFA VVDH+GFA A RALGIPKSKLSRR+A LEERLG RLIQRSTR SVT Sbjct: 1 MFTDLNDLFYFAAVVDHQGFAPASRALGIPKSKLSRRVALLEERLGVRLIQRSTRRFSVT 60 Query: 71 EIGQSYYEHCKAMLVEAEAAQEAVERNRAEPQGTVRLTCPVALLHGRVGVMLADFLIEHP 130 ++GQ+YY HCKAMLVEA+AAQ+A+E+ RAEP GTVR++CPVA+LH RVG M+A F+ ++P Sbjct: 61 DVGQNYYAHCKAMLVEADAAQQAIEQTRAEPCGTVRMSCPVAILHTRVGSMVAAFMADYP 120 Query: 131 RVTLQVESTNRRVDVVNEGIDVALRVLLPPLQDSDLVLKIFGMRHWCLAASPALLEKCRV 190 +VT+ +++TNRRVDVV EG+D+A+RV PPL+DSDLVLKI R WC+AASPAL+ Sbjct: 121 KVTVHLDATNRRVDVVGEGLDLAIRVRPPPLEDSDLVLKILAQRTWCIAASPALVRTLGP 180 Query: 191 PEVPADLHRFPSMSLAIPVEQHVWHLENADGETASIRHTPRLMTDDATALKRAAAQVFGA 250 + P DLH++P++ L QH+W L DGE H PRL+TDD L+ AA + GA Sbjct: 181 VQRPEDLHKYPTLDLGPARAQHLWQLTGPDGEKVEWEHRPRLVTDDMLMLRTAA--IAGA 238 Query: 251 GIVYLPTMVVIDELRSGALVKVLPEWSPKSGIIHAVYSSRRFLLPSVRQLIDFLAKRFDE 310 GIV LP+M++ D++ G LV++LP W P+ G++HAVY SRR LLP+VR L+D+LA++F Sbjct: 239 GIVQLPSMMMRDDMLRGELVQLLPGWQPQGGVVHAVYPSRRGLLPAVRLLLDYLAQQFAT 298 Query: 311 LED 313 +E+ Sbjct: 299 IEE 301