BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0201.p         (147 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8J107.1 D8J107_HERSS Transcription regulator protein                 171   2e-41
B9TDW7.1 B9TDW7_RICCO Carboxymethylenebutenolidase, putative          109   2e-22
F0Q4T1.1 F0Q4T1_ACIAP Transcriptional regulator, IclR family          100   1e-19
E5U905.1 E5U905_ALCXX IclR family Transcriptional regulator            99   3e-19
B2JQ79.1 B2JQ79_BURP8 Transcriptional regulator, IclR family           76   2e-12

>D8J107.1 D8J107_HERSS Transcription regulator protein
          Length = 282

 Score =  171 bits (434), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 83/103 (80%), Positives = 94/103 (91%)

Query: 45  APGMPMHVRMDGEQEIDHAQLLRQIAETQERGYSRMESRQIRGVVNLSYPVLGANDRMLA 104
           A  +  HVRMDGEQEI+ AQL+RQI +T++RG+SRMESRQIRGVVNLSYPV+GAN+RMLA
Sbjct: 180 AAMLAAHVRMDGEQEIETAQLMRQIEDTRKRGHSRMESRQIRGVVNLSYPVMGANNRMLA 239

Query: 105 ALNVPYIERIDKKVNPSLDEVQIIVHEISARLSKLMGSSSFGT 147
           ALNVPYIERIDKKVNPSLDEVQ IV EISARLS+LMG SSFG+
Sbjct: 240 ALNVPYIERIDKKVNPSLDEVQGIVQEISARLSRLMGDSSFGS 282


>B9TDW7.1 B9TDW7_RICCO Carboxymethylenebutenolidase, putative
          Length = 318

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 44/55 (80%), Positives = 52/55 (94%)

Query: 1   MLILMGENDDWTPPEACESLEKKMQDSDTPITLRLYPDTYHDFDAPGMPMHVRMD 55
           +L+LMGENDDWTPP+ACE++EKKM+ SDT I LRLYPDTYHDFDAPG+P+HVRMD
Sbjct: 224 LLVLMGENDDWTPPQACEAMEKKMEGSDTEIALRLYPDTYHDFDAPGLPVHVRMD 278


>F0Q4T1.1 F0Q4T1_ACIAP Transcriptional regulator, IclR family
          Length = 273

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 46/97 (47%), Positives = 68/97 (70%)

Query: 48  MPMHVRMDGEQEIDHAQLLRQIAETQERGYSRMESRQIRGVVNLSYPVLGANDRMLAALN 107
           +  H+++DGE  +D  +L   + + +E G++ M SRQIR V N ++P+LG   +++AALN
Sbjct: 176 LAAHIKVDGELTMDPGELFEILRQVREHGHAVMPSRQIRSVTNAAFPILGVGGQVIAALN 235

Query: 108 VPYIERIDKKVNPSLDEVQIIVHEISARLSKLMGSSS 144
           VPYIERID + NP+LDEV+ IV  I+AR+S  MG  S
Sbjct: 236 VPYIERIDAQANPTLDEVKGIVSSIAARISTSMGYQS 272


>E5U905.1 E5U905_ALCXX IclR family Transcriptional regulator
          Length = 282

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 44/98 (44%), Positives = 72/98 (73%)

Query: 48  MPMHVRMDGEQEIDHAQLLRQIAETQERGYSRMESRQIRGVVNLSYPVLGANDRMLAALN 107
           +  H++++GE E D  +L   +A+ ++ G + M SRQIRG+ N++YPV+G  ++++AA+N
Sbjct: 180 LAAHIKVEGELESDPGELFPILADVRKNGCACMASRQIRGITNVAYPVMGEGNQVIAAIN 239

Query: 108 VPYIERIDKKVNPSLDEVQIIVHEISARLSKLMGSSSF 145
           VP+IERID+K +PS+ +VQ IV  ++ RLS LMG S +
Sbjct: 240 VPHIERIDRKESPSIAQVQEIVANVAQRLSTLMGYSGY 277


>B2JQ79.1 B2JQ79_BURP8 Transcriptional regulator, IclR family
          Length = 270

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 58/87 (66%)

Query: 51  HVRMDGEQEIDHAQLLRQIAETQERGYSRMESRQIRGVVNLSYPVLGANDRMLAALNVPY 110
           H ++ GE  IDH  L    A  ++ G+S+ +S+QI GV +L++P+L A+ + +AA+  PY
Sbjct: 180 HTKVKGEVTIDHDALEAVCAAIRDAGFSQKDSQQIFGVTDLTFPLLTASGQAIAAMTCPY 239

Query: 111 IERIDKKVNPSLDEVQIIVHEISARLS 137
           ++RID+ V PSLDEV  ++ EI   LS
Sbjct: 240 LKRIDEYVAPSLDEVTAMLREIVQGLS 266