BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0198.p         (175 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q0K7S0.1 Q0K7S0_CUPNH Cation/multidrug efflux system, mebrane-fu...   126   1e-27
Q474Q0.1 Q474Q0_CUPPJ Secretion protein HlyD                          124   5e-27
B3R5W3.1 B3R5W3_CUPTR Putative secretion protein, HlyD family         119   2e-25
B2AJ05.1 B2AJ05_CUPTR Secretion protein, nolF homolog                 113   1e-23
A2SEL6.1 A2SEL6_METPP Nodulation protein NolF                          95   3e-18

>Q0K7S0.1 Q0K7S0_CUPNH Cation/multidrug efflux system, mebrane-fusion
           component
          Length = 370

 Score =  126 bits (316), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/135 (52%), Positives = 95/135 (70%), Gaps = 2/135 (1%)

Query: 1   LIAFMALRKRPAA--PVAMVEKPVQVLEFLPGDIVVAHVEPLRQVLPLSGALRALNQVAV 58
           L A +A+RK  +A  P A  +  V V+EFL  D+V    + LR  LPLSG+LRALNQ +V
Sbjct: 17  LTATVAVRKAVSARQPQAPAQAAVNVVEFLQTDLVSVARQDLRVSLPLSGSLRALNQASV 76

Query: 59  KAKVGGEVREVLVRAGEAVALGQVLIRMDTSEYQAKVEQARGSLVASRGQLDIATKTRDN 118
           KAKV GEV+ VLVR GE V  GQV++R+D +EY+A+V QARG ++A+RGQ + + +T + 
Sbjct: 77  KAKVSGEVKAVLVREGEPVRAGQVIVRIDPTEYEARVAQARGQMLATRGQFENSRQTWER 136

Query: 119 NLALLDKGFISRNAF 133
           N  L+ KGFISR AF
Sbjct: 137 NRELVGKGFISRTAF 151


>Q474Q0.1 Q474Q0_CUPPJ Secretion protein HlyD
          Length = 370

 Score =  124 bits (311), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 71/134 (52%), Positives = 94/134 (70%), Gaps = 1/134 (0%)

Query: 1   LIAFMALRKRPAAPVAMVEKPV-QVLEFLPGDIVVAHVEPLRQVLPLSGALRALNQVAVK 59
           L A  A+RK  +A  A  +     V+EFL  D+V A  + LR  LPLSG+LRALNQ +VK
Sbjct: 18  LSATAAVRKVSSARQAPTQTAAPSVVEFLQSDLVQAGAQDLRVALPLSGSLRALNQASVK 77

Query: 60  AKVGGEVREVLVRAGEAVALGQVLIRMDTSEYQAKVEQARGSLVASRGQLDIATKTRDNN 119
           AKV GEV +VLVR GEAV  GQV++R+D +EY+AKV QARG ++A+RGQ + + +T + N
Sbjct: 78  AKVSGEVLQVLVREGEAVRAGQVIVRIDPTEYEAKVAQARGQMLAARGQYENSRQTWERN 137

Query: 120 LALLDKGFISRNAF 133
             L+ KGFIS+ AF
Sbjct: 138 RELVGKGFISKTAF 151


>B3R5W3.1 B3R5W3_CUPTR Putative secretion protein, HlyD family
          Length = 369

 Score =  119 bits (297), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 60/111 (54%), Positives = 83/111 (74%)

Query: 23  QVLEFLPGDIVVAHVEPLRQVLPLSGALRALNQVAVKAKVGGEVREVLVRAGEAVALGQV 82
            V+EFL  D+V    + L+  LPLSG+LRALNQ +VKAKV GEV++VLVR GE V  GQV
Sbjct: 40  NVVEFLQTDLVRVARQDLQLALPLSGSLRALNQASVKAKVSGEVKQVLVREGEPVRAGQV 99

Query: 83  LIRMDTSEYQAKVEQARGSLVASRGQLDIATKTRDNNLALLDKGFISRNAF 133
           ++R+D +EY+A+  QARG ++A+RGQ + + +T + N  L+DKGFIS+ AF
Sbjct: 100 IVRIDPTEYEARAAQARGQMLAARGQFENSRQTWERNRDLVDKGFISQTAF 150


>B2AJ05.1 B2AJ05_CUPTR Secretion protein, nolF homolog
          Length = 368

 Score =  113 bits (282), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 58/109 (53%), Positives = 81/109 (74%)

Query: 25  LEFLPGDIVVAHVEPLRQVLPLSGALRALNQVAVKAKVGGEVREVLVRAGEAVALGQVLI 84
           +EFL  D+V    + L+  LPLSG+LRALNQ +VKAKV GEV++VLVR GE V  GQV++
Sbjct: 41  VEFLQTDLVQVARQDLQLSLPLSGSLRALNQASVKAKVSGEVKQVLVREGEPVRAGQVIV 100

Query: 85  RMDTSEYQAKVEQARGSLVASRGQLDIATKTRDNNLALLDKGFISRNAF 133
           R+D +EY+A+  QARG ++A+RGQ + + +T + N  L+ KGFIS+ AF
Sbjct: 101 RIDPAEYEARAAQARGQMLAARGQFENSRQTWERNRELVGKGFISQTAF 149


>A2SEL6.1 A2SEL6_METPP Nodulation protein NolF
          Length = 395

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 57/123 (46%), Positives = 80/123 (65%), Gaps = 5/123 (4%)

Query: 17  MVEKPVQV-LEFLPGDIVVAHVEP--LRQVLPLSGALRALNQVAVKAKVGGEVREVLVRA 73
           M+ +P  V LE  P D  VA V+P  L + L ++GAL+A+N   VKAKV GEV+++ VR 
Sbjct: 36  MLARPADVALELAPLD--VARVQPRELLRTLEITGALKAVNSAVVKAKVAGEVQQLSVRE 93

Query: 74  GEAVALGQVLIRMDTSEYQAKVEQARGSLVASRGQLDIATKTRDNNLALLDKGFISRNAF 133
           G+ V  GQVL R+D +EY  K+ QA+     +  QLDIA +  +NN AL+++GFIS+NA 
Sbjct: 94  GDRVTAGQVLGRIDATEYAWKLRQAQEQSAQAGAQLDIAERALENNRALVNQGFISKNAL 153

Query: 134 XIS 136
             S
Sbjct: 154 DTS 156