BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0197.p         (174 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q474Q0.1 Q474Q0_CUPPJ Secretion protein HlyD                          166   1e-39
Q0K7S0.1 Q0K7S0_CUPNH Cation/multidrug efflux system, mebrane-fu...   159   2e-37
B2AJ05.1 B2AJ05_CUPTR Secretion protein, nolF homolog                 154   6e-36
B3R5W3.1 B3R5W3_CUPTR Putative secretion protein, HlyD family         153   8e-36
A2SEL6.1 A2SEL6_METPP Nodulation protein NolF                         114   5e-24

>Q474Q0.1 Q474Q0_CUPPJ Secretion protein HlyD
          Length = 370

 Score =  166 bits (420), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 89/171 (52%), Positives = 117/171 (68%), Gaps = 3/171 (1%)

Query: 1   VSVDNKLLDVVDLRQMELEAPVPTADILKVKLGQEVLVRVEGLPDAVAGKVVRINPATQS 60
           VS D +L+DVVDLR +ELEAPVP AD+ +  +GQ V + VEG     AG +VRINPA   
Sbjct: 203 VSPDTRLIDVVDLRVLELEAPVPMADVARASVGQSVQLDVEG-AGQFAGALVRINPAVSQ 261

Query: 61  GSRSIMVYVRIDNPDNLLRAGMFADASLTLDKRDAVLTVPATAIQNEGGKAYVYTIENGK 120
           G+RSIMVYVR+ N D  LRAGMFA  +L L +R  V++VPA+A++++G +A+VY IENG 
Sbjct: 262 GTRSIMVYVRVQNDDGKLRAGMFARGALVLGQRSGVVSVPASAVRSDGERAFVYVIENGV 321

Query: 121 LTRRDVVTGLRGVDSKGNAVEISSGLQEGARIVKANLGNLNAGTPVKILPA 171
           L  R V TG+R  D     VEI SGL  G  +V+ NLG L +G+ V+ + A
Sbjct: 322 LAERAVQTGVR--DEGSGMVEIVSGLTTGTEVVRNNLGTLRSGSQVRRVKA 370


>Q0K7S0.1 Q0K7S0_CUPNH Cation/multidrug efflux system, mebrane-fusion
           component
          Length = 370

 Score =  159 bits (401), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 85/167 (50%), Positives = 111/167 (66%), Gaps = 3/167 (1%)

Query: 1   VSVDNKLLDVVDLRQMELEAPVPTADILKVKLGQEVLVRVEGLPDAVAGKVVRINPATQS 60
           VS D +L+DVVDLR +ELEAP+P AD+ +  +GQ V + VEG      GK+VRINPA   
Sbjct: 203 VSPDTRLVDVVDLRVLELEAPIPMADVARAAVGQPVALDVEG-AGRFTGKLVRINPAVSQ 261

Query: 61  GSRSIMVYVRIDNPDNLLRAGMFADASLTLDKRDAVLTVPATAIQNEGGKAYVYTIENGK 120
           G+RSIMVY+RI+N D  LRAGMFA  +L L +R  V+ VP++A++ EG +A+VY I+   
Sbjct: 262 GTRSIMVYIRIENADQTLRAGMFARGALVLGERAGVVAVPSSAVRTEGERAFVYAIDKDT 321

Query: 121 LTRRDVVTGLRGVDSKGNAVEISSGLQEGARIVKANLGNLNAGTPVK 167
           L  R V  G+R  D     VEI SGL  G  IV+ NLG L +G+ VK
Sbjct: 322 LAERPVQLGIR--DEASGMVEIVSGLDAGTEIVRNNLGTLRSGSQVK 366


>B2AJ05.1 B2AJ05_CUPTR Secretion protein, nolF homolog
          Length = 368

 Score =  154 bits (388), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 89/169 (52%), Positives = 116/169 (68%), Gaps = 3/169 (1%)

Query: 1   VSVDNKLLDVVDLRQMELEAPVPTADILKVKLGQEVLVRVEGLPDAVAGKVVRINPATQS 60
           VS D +L+DVVDLR +ELEAP+P A++ +  +GQ V + VEG     AGK+VRINPA   
Sbjct: 201 VSPDTRLVDVVDLRVLELEAPIPMAEVARAAVGQPVALEVEG-AGGFAGKLVRINPAVSE 259

Query: 61  GSRSIMVYVRIDNPDNLLRAGMFADASLTLDKRDAVLTVPATAIQNEGGKAYVYTIENGK 120
           G+RSIMVYVR+DN D  LRAGMFA  +L L +R AV+ VP +A++ EG +A+VY IE   
Sbjct: 260 GTRSIMVYVRVDNADQKLRAGMFARGALVLGQRAAVVAVPVSAVRTEGERAFVYAIERDT 319

Query: 121 LTRRDVVTGLRGVDSKGNAVEISSGLQEGARIVKANLGNLNAGTPVKIL 169
           L  R V  GLR  D  G  VEI +GL  GA IV+ NLG L +G+ V+++
Sbjct: 320 LAERPVQLGLR--DEAGGMVEIVAGLDAGAEIVRNNLGTLRSGSQVRLV 366


>B3R5W3.1 B3R5W3_CUPTR Putative secretion protein, HlyD family
          Length = 369

 Score =  153 bits (387), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 89/171 (52%), Positives = 116/171 (67%), Gaps = 3/171 (1%)

Query: 1   VSVDNKLLDVVDLRQMELEAPVPTADILKVKLGQEVLVRVEGLPDAVAGKVVRINPATQS 60
           VS D +L+DVVDLR +ELEAP+P AD+ +  +GQ V + VEG     AG +VRINPA   
Sbjct: 202 VSPDTRLVDVVDLRVLELEAPIPMADVARAAVGQPVALEVEG-AGHFAGTLVRINPAVSE 260

Query: 61  GSRSIMVYVRIDNPDNLLRAGMFADASLTLDKRDAVLTVPATAIQNEGGKAYVYTIENGK 120
           G+RSIMVY+R+DNP+  LRAGMFA  +L L +R AV+ VP +A++ EG +A+VY IE   
Sbjct: 261 GTRSIMVYIRVDNPEQQLRAGMFARGALVLGQRAAVVAVPVSAVRTEGERAFVYAIERDT 320

Query: 121 LTRRDVVTGLRGVDSKGNAVEISSGLQEGARIVKANLGNLNAGTPVKILPA 171
           L  R V  GLR  D  G  VEI +GL  GA IV+ NLG L +G+ V+ + A
Sbjct: 321 LAERPVQLGLR--DEAGGMVEIVAGLDAGAEIVRNNLGTLRSGSQVRRVKA 369


>A2SEL6.1 A2SEL6_METPP Nodulation protein NolF
          Length = 395

 Score =  114 bits (285), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 63/171 (36%), Positives = 113/171 (66%), Gaps = 5/171 (2%)

Query: 1   VSVDNKLLDVVDLRQMELEAPVPTADILKVKLGQEVLVRVEGLPDAVAGKVVRINPATQS 60
           V+VD KL+++VDL ++ELEA V   D+  V++G    ++V+G+   V  +V RINPA Q+
Sbjct: 205 VAVDAKLVEIVDLSRIELEAAVAPEDVGAVRIGAAARLQVDGIAAPVLARVARINPAAQA 264

Query: 61  GSRSIMVYVRIDNPDNLLRAGMFADASLTLDKRDAVLTVPATAIQNEGGKAYVYTIENGK 120
           G+R++MVY+ ++ P   LR G+FA   + L++R A  +VPATA++ +  + YV  +E+G+
Sbjct: 265 GTRAVMVYLAVE-PQPGLRQGLFAKGRIELERRTAS-SVPATAVRIDQARPYVLAVEDGR 322

Query: 121 LTRRDVVTGLRG-VDSKGNA--VEISSGLQEGARIVKANLGNLNAGTPVKI 168
           + +  V  GLR    ++G+   VE++SG+ +G+ +++  +G +  GT V++
Sbjct: 323 VVQHGVELGLRADAAARGDEALVEVNSGIADGSTVLRGTVGAVREGTRVRL 373