BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0189.p         (71 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IXC7.1 D8IXC7_HERSS Drug efflux lipoprotein                          99   2e-19
B2U812.1 B2U812_RALPJ RND efflux system, outer membrane lipoprot...    69   2e-10
E2SWJ5.1 E2SWJ5_9RALS Outer membrane multidrug efflux protein OprB     69   2e-10
Q1LHB4.1 Q1LHB4_RALME Multidrug/solvent efflux outer membrane pr...    67   8e-10
F2L7E0.1 F2L7E0_BURGA Putative outer membrane protein OprM             67   1e-09

>D8IXC7.1 D8IXC7_HERSS Drug efflux lipoprotein
          Length = 483

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 44/62 (70%), Positives = 50/62 (80%)

Query: 8  RLKQLSAAMLVVGVLSGCTLAPTYERPQAPVEGSYPADAKGQAAYDAATLGWRQFFPDQR 67
          RL  + AA+++ GVL GC+LAPTYERPQAPVE SYPADA G+A   A  LGWRQFFPDQR
Sbjct: 11 RLLHMCAALVMAGVLGGCSLAPTYERPQAPVESSYPADAAGRAELQAVNLGWRQFFPDQR 70

Query: 68 LQ 69
          LQ
Sbjct: 71 LQ 72


>B2U812.1 B2U812_RALPJ RND efflux system, outer membrane lipoprotein, NodT
          family
          Length = 514

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/61 (57%), Positives = 41/61 (67%), Gaps = 11/61 (18%)

Query: 20 GVLSGCTLAPTYERPQAPVEGSY---------PADAK--GQAAYDAATLGWRQFFPDQRL 68
          GVLSGC+LAPTYERP AP+ G+Y         PAD+   G+ A  A  LGWR+FFPD RL
Sbjct: 21 GVLSGCSLAPTYERPDAPITGTYPQAPAGYAVPADSAKPGENAPRATELGWREFFPDARL 80

Query: 69 Q 69
          Q
Sbjct: 81 Q 81


>E2SWJ5.1 E2SWJ5_9RALS Outer membrane multidrug efflux protein OprB
          Length = 514

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/61 (57%), Positives = 41/61 (67%), Gaps = 11/61 (18%)

Query: 20 GVLSGCTLAPTYERPQAPVEGSY---------PADAK--GQAAYDAATLGWRQFFPDQRL 68
          GVLSGC+LAPTYERP AP+ G+Y         PAD+   G+ A  A  LGWR+FFPD RL
Sbjct: 21 GVLSGCSLAPTYERPDAPITGTYPQAPAGYAVPADSAKPGENAPRATELGWREFFPDARL 80

Query: 69 Q 69
          Q
Sbjct: 81 Q 81


>Q1LHB4.1 Q1LHB4_RALME Multidrug/solvent efflux outer membrane protein, RND
          family
          Length = 491

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 40/61 (65%), Gaps = 8/61 (13%)

Query: 18 VVGVLSGCTLAPTYERPQAPVEGSYPADAKGQAAYD--------AATLGWRQFFPDQRLQ 69
          V GVLSGCT+AP Y+RP APV G YPA  +G A+ +        A  +GWR+FF D RLQ
Sbjct: 11 VAGVLSGCTMAPHYDRPAAPVAGGYPAAPEGYASAEVKSGETRRATEIGWREFFTDPRLQ 70

Query: 70 G 70
          G
Sbjct: 71 G 71


>F2L7E0.1 F2L7E0_BURGA Putative outer membrane protein OprM
          Length = 514

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 47/82 (57%), Gaps = 17/82 (20%)

Query: 2  FKFPALRLKQLSAAMLVVGVLSGCTLAPTYERPQAPVEGSYPAD--------------AK 47
          F FPAL+    + A +++   +GCT+AP Y+RP APV GS+P+D              A 
Sbjct: 11 FPFPALKPSTTAGAAVLLFAATGCTMAPHYQRPAAPVSGSFPSDGVYATQPGADGSHSAN 70

Query: 48 GQAAYDAATLGWRQFFPDQRLQ 69
          GQAA D   +GWR FF D RLQ
Sbjct: 71 GQAAAD---IGWRNFFADPRLQ 89