BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0142.p         (137 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A6T291.1 A6T291_JANMA Pyrimidine operon regulatory protein EC=2....   130   5e-29
A4G8L9.1 A4G8L9_HERAR Bifunctional protein PyrR EC=2.4.2.9            130   8e-29
D8IXB6.1 D8IXB6_HERSS Pyrimidine operon attenuation protein/urac...   122   2e-26
F1VXI6.1 F1VXI6_9BURK Uracil phosphoribosyltransferase                102   2e-20
C3X4I0.1 C3X4I0_OXAFO Pyrimidine regulatory protein PyrR               90   9e-17

>A6T291.1 A6T291_JANMA Pyrimidine operon regulatory protein EC=2.4.2.9
          Length = 187

 Score =  130 bits (328), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 64/76 (84%), Positives = 68/76 (89%)

Query: 5  NPSSPLDAEALYARLAQQVKAGLQGAEQVAIVGIHSGGAWLAERLAKELQLDDRLGFIDV 64
          NP + LDAEALY  LAQQVKAGL  AE VAIVGIHSGGAWLAERLA+ELQL +RLGFIDV
Sbjct: 20 NPDNALDAEALYQVLAQQVKAGLAHAENVAIVGIHSGGAWLAERLAQELQLTERLGFIDV 79

Query: 65 SFYRDDFAEKGLRPDV 80
          SFYRDDF+EKGLRPDV
Sbjct: 80 SFYRDDFSEKGLRPDV 95


>A4G8L9.1 A4G8L9_HERAR Bifunctional protein PyrR EC=2.4.2.9
          Length = 172

 Score =  130 bits (326), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 64/80 (80%), Positives = 69/80 (86%)

Query: 1  MSTTNPSSPLDAEALYARLAQQVKAGLQGAEQVAIVGIHSGGAWLAERLAKELQLDDRLG 60
          M+  NP+  LDAEALY +LAQQVK GL  AE VAIVGI+SGGAWLAERLA ELQL +RLG
Sbjct: 1  MTIPNPNPELDAEALYQQLAQQVKTGLAKAENVAIVGIYSGGAWLAERLAAELQLTERLG 60

Query: 61 FIDVSFYRDDFAEKGLRPDV 80
          FIDVSFYRDDFAEKGLRPDV
Sbjct: 61 FIDVSFYRDDFAEKGLRPDV 80


>D8IXB6.1 D8IXB6_HERSS Pyrimidine operon attenuation protein/uracil
          phosphoribosyltransferase regulatory protein
          Length = 170

 Score =  122 bits (306), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 62/80 (77%), Positives = 68/80 (85%), Gaps = 2/80 (2%)

Query: 1  MSTTNPSSPLDAEALYARLAQQVKAGLQGAEQVAIVGIHSGGAWLAERLAKELQLDDRLG 60
          MSTT   S LDAEALY  L QQ+KAGLQGA +VA+VGIHSGGAWLAERLA EL L +RLG
Sbjct: 1  MSTT--PSQLDAEALYQTLVQQIKAGLQGATEVALVGIHSGGAWLAERLAAELGLAERLG 58

Query: 61 FIDVSFYRDDFAEKGLRPDV 80
          F+DVSFYRDDF+EKGLR DV
Sbjct: 59 FVDVSFYRDDFSEKGLRADV 78


>F1VXI6.1 F1VXI6_9BURK Uracil phosphoribosyltransferase
          Length = 172

 Score =  102 bits (254), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/71 (71%), Positives = 58/71 (81%)

Query: 10 LDAEALYARLAQQVKAGLQGAEQVAIVGIHSGGAWLAERLAKELQLDDRLGFIDVSFYRD 69
          LDAEALYA L +Q+ A L   E VA+VGI+SGGAWLAERLAK L+++DRLGFIDVSFYRD
Sbjct: 10 LDAEALYADLERQIAAVLGSTEHVALVGIYSGGAWLAERLAKALKIEDRLGFIDVSFYRD 69

Query: 70 DFAEKGLRPDV 80
          D AEKGL   V
Sbjct: 70 DVAEKGLHAAV 80


>C3X4I0.1 C3X4I0_OXAFO Pyrimidine regulatory protein PyrR
          Length = 170

 Score = 90.1 bits (222), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 43/73 (58%), Positives = 57/73 (78%)

Query: 8  SPLDAEALYARLAQQVKAGLQGAEQVAIVGIHSGGAWLAERLAKELQLDDRLGFIDVSFY 67
          + L+AEALYA+L +Q++  L    +VAIVGI SGGAW+AER+  +L L++  GFIDVSFY
Sbjct: 6  TELNAEALYAKLLKQIRDALTNEPKVAIVGIRSGGAWIAERIVADLGLENPPGFIDVSFY 65

Query: 68 RDDFAEKGLRPDV 80
          RDD+AEKGL  +V
Sbjct: 66 RDDYAEKGLPAEV 78