BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0113.p         (91 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IX91.1 D8IX91_HERSS ABC-type sugar transport system, permease ...   174   5e-42
B2JDG6.1 B2JDG6_BURP8 Binding-protein-dependent transport system...   155   3e-36
F2L8X0.1 F2L8X0_BURGA Binding-protein-dependent transport system...   154   4e-36
C5ACB9.1 C5ACB9_BURGB Binding-protein-dependent transport system...   152   2e-35
Q8XXH1.1 Q8XXH1_RALSO Probable transmembrane abc transporter pro...   151   3e-35

>D8IX91.1 D8IX91_HERSS ABC-type sugar transport system, permease component
           protein
          Length = 324

 Score =  174 bits (440), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 87/91 (95%), Positives = 89/91 (97%)

Query: 1   VLPHLKRAITVVIMIETIFLLSVFAEIFTTTAGGPGTETTNLTYLVYSIGLQQFDIGIAS 60
           VLPHLKRAITVVIMIETIFLLSVFAEIFTTTAGGPGT TTNLT+LVYSIGLQQFDIGIAS
Sbjct: 234 VLPHLKRAITVVIMIETIFLLSVFAEIFTTTAGGPGTATTNLTFLVYSIGLQQFDIGIAS 293

Query: 61  AGGIFAVVLANIVSFFLVRMLAKNLKGANEK 91
           AGGIFAVVLANIVSFFLVRMLA+NLKG NEK
Sbjct: 294 AGGIFAVVLANIVSFFLVRMLARNLKGVNEK 324


>B2JDG6.1 B2JDG6_BURP8 Binding-protein-dependent transport systems inner
           membrane component
          Length = 312

 Score =  155 bits (391), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 73/90 (81%), Positives = 83/90 (92%)

Query: 2   LPHLKRAITVVIMIETIFLLSVFAEIFTTTAGGPGTETTNLTYLVYSIGLQQFDIGIASA 61
           LPHLKRAI VV+M+ETIFLLS+FAEI+TTT GGPG  TTNL+YL+Y++GLQQFD+G+ASA
Sbjct: 223 LPHLKRAIAVVVMMETIFLLSIFAEIYTTTGGGPGNATTNLSYLIYALGLQQFDVGLASA 282

Query: 62  GGIFAVVLANIVSFFLVRMLAKNLKGANEK 91
           GGI AVVLANIVSFFLVRMLAKNLKG  EK
Sbjct: 283 GGILAVVLANIVSFFLVRMLAKNLKGEYEK 312


>F2L8X0.1 F2L8X0_BURGA Binding-protein-dependent transport systems inner
           membrane component
          Length = 314

 Score =  154 bits (389), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 73/89 (82%), Positives = 82/89 (92%)

Query: 2   LPHLKRAITVVIMIETIFLLSVFAEIFTTTAGGPGTETTNLTYLVYSIGLQQFDIGIASA 61
           LPHLKRAI VV+M+ETIFLLS+FAEI+TTT GGPG  TTNL+YL+YS+GLQQFD+G+ASA
Sbjct: 225 LPHLKRAIAVVVMMETIFLLSIFAEIYTTTGGGPGNATTNLSYLIYSLGLQQFDVGLASA 284

Query: 62  GGIFAVVLANIVSFFLVRMLAKNLKGANE 90
           GGI AVVLANIVSFFLVRMLAKNLKG  E
Sbjct: 285 GGILAVVLANIVSFFLVRMLAKNLKGEYE 313


>C5ACB9.1 C5ACB9_BURGB Binding-protein-dependent transport systems inner
           membrane component
          Length = 314

 Score =  152 bits (384), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 71/89 (79%), Positives = 82/89 (92%)

Query: 2   LPHLKRAITVVIMIETIFLLSVFAEIFTTTAGGPGTETTNLTYLVYSIGLQQFDIGIASA 61
           LPHLKRAI VV+M+ETIFLLS+FAEI+TTT GGPG  TTNL+YL+Y++GLQQFD+G+ASA
Sbjct: 225 LPHLKRAIAVVVMMETIFLLSIFAEIYTTTGGGPGNATTNLSYLIYALGLQQFDVGLASA 284

Query: 62  GGIFAVVLANIVSFFLVRMLAKNLKGANE 90
           GGI AVVLAN+VSFFLVRMLAKNLKG  E
Sbjct: 285 GGILAVVLANVVSFFLVRMLAKNLKGEYE 313


>Q8XXH1.1 Q8XXH1_RALSO Probable transmembrane abc transporter protein
          Length = 317

 Score =  151 bits (381), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 70/90 (77%), Positives = 83/90 (92%)

Query: 2   LPHLKRAITVVIMIETIFLLSVFAEIFTTTAGGPGTETTNLTYLVYSIGLQQFDIGIASA 61
           LPHLKRAI VV+M+ETIFLLS+FAEI+TTT GGPG  TTNL+YL+Y++GLQQFD+G+ASA
Sbjct: 228 LPHLKRAIAVVVMMETIFLLSIFAEIYTTTGGGPGNATTNLSYLIYALGLQQFDVGLASA 287

Query: 62  GGIFAVVLANIVSFFLVRMLAKNLKGANEK 91
           GGI AVV+ANIVSFFLVRMLAKNLKG  ++
Sbjct: 288 GGILAVVVANIVSFFLVRMLAKNLKGEYQQ 317