BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0097.p         (84 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IX79.1 D8IX79_HERSS Phosphomethylpyrimidine kinase protein EC=...   100   1e-19
F1W3Q3.1 F1W3Q3_9BURK Phosphomethylpyrimidine kinase                   96   2e-18
C3X5F6.1 C3X5F6_OXAFO Phosphomethylpyrimidine kinase                   90   9e-17
B6BVX1.1 B6BVX1_9PROT Bifunctional thiED protein EC=2.5.1.3 EC=2...    84   5e-15
D3RVE7.1 D3RVE7_ALLVD Phosphomethylpyrimidine kinase EC=2.7.4.7        78   4e-13

>D8IX79.1 D8IX79_HERSS Phosphomethylpyrimidine kinase protein EC=2.7.4.7
          Length = 288

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/88 (69%), Positives = 65/88 (73%), Gaps = 9/88 (10%)

Query: 1   VVNRWFG-------PEGAF--ASWSWPRLPDEFHGSGCTLAAALSAQLAQGLGMRDAIEA 51
           V+NRW+G        E A   A W W RLPDEFHGSGCTLAAALSA LA+GL MR AIE 
Sbjct: 189 VINRWYGQLFRSEFAEEAIETARWRWTRLPDEFHGSGCTLAAALSACLARGLPMRQAIEL 248

Query: 52  AQQYCQHALATSYAIAAGQRIPNRVPQF 79
           AQ Y QHALATSYAIA GQRIP+RVP F
Sbjct: 249 AQHYTQHALATSYAIADGQRIPHRVPAF 276


>F1W3Q3.1 F1W3Q3_9BURK Phosphomethylpyrimidine kinase
          Length = 268

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 46/75 (61%), Positives = 55/75 (73%), Gaps = 1/75 (1%)

Query: 1   VVNRWFGPEGAFASWSWPRLPDEFHGSGCTLAAALSAQLAQGLGMRDAIEAAQQYCQHAL 60
           VVNRW+  +GA  SWSWPRLP  FHGSGCTLA+A++  LA GL M  A++ AQ +C   L
Sbjct: 183 VVNRWY-TDGASRSWSWPRLPGTFHGSGCTLASAIAGALACGLPMEVALDVAQAFCHRTL 241

Query: 61  ATSYAIAAGQRIPNR 75
             S+AIA GQRIPNR
Sbjct: 242 EQSFAIADGQRIPNR 256


>C3X5F6.1 C3X5F6_OXAFO Phosphomethylpyrimidine kinase
          Length = 272

 Score = 90.1 bits (222), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 42/75 (56%), Positives = 54/75 (72%), Gaps = 1/75 (1%)

Query: 1   VVNRWFGPEGAFASWSWPRLPDEFHGSGCTLAAALSAQLAQGLGMRDAIEAAQQYCQHAL 60
           V N+WFG +G    W W RLP EFHG+GCTLA+A++A LAQGL M  A+E  Q +CQ AL
Sbjct: 196 VFNQWFGADG-MKQWKWRRLPGEFHGTGCTLASAIAAYLAQGLLMEKALEKGQVWCQAAL 254

Query: 61  ATSYAIAAGQRIPNR 75
             +++IA GQ+IP R
Sbjct: 255 EKAFSIAKGQKIPGR 269


>B6BVX1.1 B6BVX1_9PROT Bifunctional thiED protein EC=2.5.1.3 EC=2.7.4.7
          Length = 278

 Score = 84.3 bits (207), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/75 (48%), Positives = 51/75 (68%)

Query: 1   VVNRWFGPEGAFASWSWPRLPDEFHGSGCTLAAALSAQLAQGLGMRDAIEAAQQYCQHAL 60
           VVNR +  +G   S++W RLP E+HGSGCTLA+A++A +AQGL ++ A+E  Q +  H L
Sbjct: 187 VVNRLYLFDGETESYAWKRLPHEYHGSGCTLASAIAAYVAQGLSIKQAVEEGQDFTWHTL 246

Query: 61  ATSYAIAAGQRIPNR 75
             +     GQ+IPNR
Sbjct: 247 DAAIQTGQGQKIPNR 261


>D3RVE7.1 D3RVE7_ALLVD Phosphomethylpyrimidine kinase EC=2.7.4.7
          Length = 272

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 37/76 (48%), Positives = 49/76 (64%)

Query: 1   VVNRWFGPEGAFASWSWPRLPDEFHGSGCTLAAALSAQLAQGLGMRDAIEAAQQYCQHAL 60
           V NR FG  G   +W WPRLP E+HGSGCTLA+A++A+LA G+ +  A+E+AQ Y   AL
Sbjct: 190 VTNRLFGSNGERHAWDWPRLPGEYHGSGCTLASAIAARLAHGMTLIQAVESAQAYTWTAL 249

Query: 61  ATSYAIAAGQRIPNRV 76
             +      Q  PNR+
Sbjct: 250 ERALRTGRCQLTPNRL 265