BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0094.p         (140 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IW65.1 D8IW65_HERSS UDP-N-acetylmuramate--L-alanine ligase EC=...   130   5e-29
A6T2F7.1 MURC_JANMA UDP-N-acetylmuramate--L-alanine ligase EC=6....   125   3e-27
C3XBP5.1 C3XBP5_OXAFO UDP-N-acetylmuramate--L-alanine ligase EC=...   123   9e-27
A4G8T7.1 MURC_HERAR UDP-N-acetylmuramate--L-alanine ligase EC=6....   121   4e-26
B5WM78.1 B5WM78_9BURK UDP-N-acetylmuramate--L-alanine ligase EC=...   119   1e-25

>D8IW65.1 D8IW65_HERSS UDP-N-acetylmuramate--L-alanine ligase EC=6.3.2.8
          Length = 475

 Score =  130 bits (328), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 66/72 (91%), Positives = 67/72 (93%)

Query: 62  GARILYGHAAENIENADAIVTSTAVKGDNPEVVAARKKHIPIVPRAVMLGELMRLKAGIA 121
           GA I YGHAA NIE ADAIVTSTAVKGDNPEV+AARKKHIPIVPRAVMLGELMRLK GIA
Sbjct: 50  GACIRYGHAAGNIEGADAIVTSTAVKGDNPEVLAARKKHIPIVPRAVMLGELMRLKKGIA 109

Query: 122 IAGTHGKTTTTS 133
           IAGTHGKTTTTS
Sbjct: 110 IAGTHGKTTTTS 121


>A6T2F7.1 MURC_JANMA UDP-N-acetylmuramate--L-alanine ligase EC=6.3.2.8
          Length = 465

 Score =  125 bits (313), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 61/72 (84%), Positives = 66/72 (91%)

Query: 62  GARILYGHAAENIENADAIVTSTAVKGDNPEVVAARKKHIPIVPRAVMLGELMRLKAGIA 121
           GA++  GHAAENIE ADAIVTSTAVK DNPEV+AAR+KHIPIVPRAVML ELMRL+ GIA
Sbjct: 50  GAKVTLGHAAENIEKADAIVTSTAVKEDNPEVIAAREKHIPIVPRAVMLAELMRLRRGIA 109

Query: 122 IAGTHGKTTTTS 133
           IAGTHGKTTTTS
Sbjct: 110 IAGTHGKTTTTS 121


>C3XBP5.1 C3XBP5_OXAFO UDP-N-acetylmuramate--L-alanine ligase EC=6.3.2.8
          Length = 469

 Score =  123 bits (308), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 58/72 (80%), Positives = 66/72 (91%)

Query: 62  GARILYGHAAENIENADAIVTSTAVKGDNPEVVAARKKHIPIVPRAVMLGELMRLKAGIA 121
           GAR++ GHA ENIENADA+V STA++ DNPEV+AARKK+IP+VPRAVML ELMRLK GIA
Sbjct: 50  GARVMLGHAPENIENADAVVVSTAIRDDNPEVLAARKKNIPLVPRAVMLAELMRLKRGIA 109

Query: 122 IAGTHGKTTTTS 133
           IAGTHGKTTTTS
Sbjct: 110 IAGTHGKTTTTS 121


>A4G8T7.1 MURC_HERAR UDP-N-acetylmuramate--L-alanine ligase EC=6.3.2.8
          Length = 469

 Score =  121 bits (303), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 59/72 (81%), Positives = 66/72 (91%)

Query: 62  GARILYGHAAENIENADAIVTSTAVKGDNPEVVAARKKHIPIVPRAVMLGELMRLKAGIA 121
           GA++  GHAAENI +ADAIVTSTAV+ DNPEVVAAR+KHIPIVPRA+ML ELMRL+ GIA
Sbjct: 50  GAKVTLGHAAENIASADAIVTSTAVQQDNPEVVAAREKHIPIVPRAMMLAELMRLRRGIA 109

Query: 122 IAGTHGKTTTTS 133
           IAGTHGKTTTTS
Sbjct: 110 IAGTHGKTTTTS 121


>B5WM78.1 B5WM78_9BURK UDP-N-acetylmuramate--L-alanine ligase EC=6.3.2.8
          Length = 467

 Score =  119 bits (299), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/110 (64%), Positives = 79/110 (71%), Gaps = 2/110 (1%)

Query: 25  IAALELSGKA-VAVAVNRQVVPSQLWAGRVLADADRVDGARILYGHAAENIENADAIVTS 83
           I  + +SG A V V +  QV  S L    V     R+ GARI  GHAAENIE ADA+V S
Sbjct: 13  IGGVGMSGIAEVLVNLGYQVSGSDLSGNAVTERLARL-GARISIGHAAENIEGADAVVVS 71

Query: 84  TAVKGDNPEVVAARKKHIPIVPRAVMLGELMRLKAGIAIAGTHGKTTTTS 133
           TAV+ DNPEV+AAR + IPIVPRAVML ELMRLK GIAIAGTHGKTTTTS
Sbjct: 72  TAVRSDNPEVLAARHRRIPIVPRAVMLAELMRLKQGIAIAGTHGKTTTTS 121