BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0086.p (351 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A6SUQ4.1 RUVB_JANMA Holliday junction ATP-dependent DNA helicase... 670 0.0 D8IX72.1 D8IX72_HERSS Holliday junction ATP-dependent DNA helica... 667 0.0 A4G1U9.1 RUVB_HERAR Holliday junction ATP-dependent DNA helicase... 666 0.0 F1VW56.1 F1VW56_9BURK Holliday junction DNA helicase RuvB 644 0.0 C3XB58.1 C3XB58_OXAFO Holliday junction ATP-dependent DNA helica... 603 e-170 >A6SUQ4.1 RUVB_JANMA Holliday junction ATP-dependent DNA helicase ruvB EC=3.6.4.12 Length = 352 Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/351 (94%), Positives = 344/351 (98%) Query: 1 MSIQTDDFSEQRIIAATPASANEEAIERALRPKQLDEYVGQEKVRGQLEIFISAARQRGE 60 MSIQTDDFSEQRIIAATPASANEEAIERALRPKQLDEYVGQEK+RGQLEIFI+AARQR E Sbjct: 1 MSIQTDDFSEQRIIAATPASANEEAIERALRPKQLDEYVGQEKIRGQLEIFITAARQRHE 60 Query: 61 ALDHTLLFGPPGLGKTTMAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFID 120 ALDHTLLFGPPGLGKTT+AHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFID Sbjct: 61 ALDHTLLFGPPGLGKTTLAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFID 120 Query: 121 EIHRLSPVVEEILYPALEDYQIDIMIGEGPAARSVRLDLQPFTLVGATTRAGMLTNPLRD 180 EIHRLSPVVEEILYPALEDYQIDIMIGEGPAARSVRLDLQPFTLVGATTRAGMLTNPLRD Sbjct: 121 EIHRLSPVVEEILYPALEDYQIDIMIGEGPAARSVRLDLQPFTLVGATTRAGMLTNPLRD 180 Query: 181 RFGIVARLEFYTPPELARIVTRSAGLLNAPIVEEGALEIAKRSRGTPRIANRLLRRVRDY 240 RFGIVARLEFYTP EL +IVTRS+ LLNAPI E+GA EIAKRSRGTPRIANRLLRRVRDY Sbjct: 181 RFGIVARLEFYTPLELTKIVTRSSALLNAPIDEDGAFEIAKRSRGTPRIANRLLRRVRDY 240 Query: 241 AEVKGNGRITQAMADAALVMLDVDPVGFDVMDRKLLEAVLFKFNGGPVGLDNLAAAIGEE 300 AEVKGNG+IT+AMADAALVMLDVDPVGFD+MDRKLLEAVLFKFNGGPVGLDNLAAAIGEE Sbjct: 241 AEVKGNGKITKAMADAALVMLDVDPVGFDLMDRKLLEAVLFKFNGGPVGLDNLAAAIGEE 300 Query: 301 RDTIEDVLEPYLIQQGYLQRTPRGRVATPLAYTHFGVTAPRTGPNGDLWAG 351 RDTIEDVLEPYLIQQG+LQRTPRGR+ATP+AY HFGVTAP+TGPNGDLWAG Sbjct: 301 RDTIEDVLEPYLIQQGFLQRTPRGRIATPVAYAHFGVTAPQTGPNGDLWAG 351 >D8IX72.1 D8IX72_HERSS Holliday junction ATP-dependent DNA helicase ruvB EC=3.6.4.12 Length = 351 Score = 667 bits (1721), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/351 (94%), Positives = 341/351 (97%) Query: 1 MSIQTDDFSEQRIIAATPASANEEAIERALRPKQLDEYVGQEKVRGQLEIFISAARQRGE 60 MSIQTDDFSEQRII+ATPASANEEAIERALRPKQLDEYVGQEKVR QLEIFISAAR+RGE Sbjct: 1 MSIQTDDFSEQRIISATPASANEEAIERALRPKQLDEYVGQEKVRAQLEIFISAARKRGE 60 Query: 61 ALDHTLLFGPPGLGKTTMAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFID 120 LDHTLLFGPPGLGKTTMAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFID Sbjct: 61 PLDHTLLFGPPGLGKTTMAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFID 120 Query: 121 EIHRLSPVVEEILYPALEDYQIDIMIGEGPAARSVRLDLQPFTLVGATTRAGMLTNPLRD 180 EIHR+SPVVEEILYPALEDYQIDIMIGEGPAARSVRLDLQPFTLVGATTRAGMLTNPLRD Sbjct: 121 EIHRMSPVVEEILYPALEDYQIDIMIGEGPAARSVRLDLQPFTLVGATTRAGMLTNPLRD 180 Query: 181 RFGIVARLEFYTPPELARIVTRSAGLLNAPIVEEGALEIAKRSRGTPRIANRLLRRVRDY 240 RFGIVARLEFYTPPELARIVTRSAGLLNAPIVE+GALEIA+RSRGTPRIANRLLRRVRDY Sbjct: 181 RFGIVARLEFYTPPELARIVTRSAGLLNAPIVEDGALEIARRSRGTPRIANRLLRRVRDY 240 Query: 241 AEVKGNGRITQAMADAALVMLDVDPVGFDVMDRKLLEAVLFKFNGGPVGLDNLAAAIGEE 300 AEVKG GRIT+ MADAALVMLDVDPVGFD+MDRKLLEAVLFKF GGPVGLDNLAAAIGEE Sbjct: 241 AEVKGQGRITREMADAALVMLDVDPVGFDLMDRKLLEAVLFKFGGGPVGLDNLAAAIGEE 300 Query: 301 RDTIEDVLEPYLIQQGYLQRTPRGRVATPLAYTHFGVTAPRTGPNGDLWAG 351 RDTIEDVLEPYLIQQGYLQRTPRGR+AT AY HFGVTAPRT PNGDLW G Sbjct: 301 RDTIEDVLEPYLIQQGYLQRTPRGRIATGAAYQHFGVTAPRTSPNGDLWGG 351 >A4G1U9.1 RUVB_HERAR Holliday junction ATP-dependent DNA helicase ruvB EC=3.6.4.12 Length = 352 Score = 666 bits (1718), Expect = 0.0, Method: Compositional matrix adjust. Identities = 330/351 (94%), Positives = 342/351 (97%) Query: 1 MSIQTDDFSEQRIIAATPASANEEAIERALRPKQLDEYVGQEKVRGQLEIFISAARQRGE 60 MSIQTDDFSEQR+IAATPASANEEAIERALRPKQLDEYVGQEK+RGQLEIFI+AARQR E Sbjct: 1 MSIQTDDFSEQRVIAATPASANEEAIERALRPKQLDEYVGQEKIRGQLEIFITAARQRRE 60 Query: 61 ALDHTLLFGPPGLGKTTMAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFID 120 ALDHTLLFGPPGLGKTT+AHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFID Sbjct: 61 ALDHTLLFGPPGLGKTTLAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFID 120 Query: 121 EIHRLSPVVEEILYPALEDYQIDIMIGEGPAARSVRLDLQPFTLVGATTRAGMLTNPLRD 180 EIHRLSPVVEEILYPALEDYQIDIMIGEGPAARSVRLDLQPFTLVGATTRAGMLTNPLRD Sbjct: 121 EIHRLSPVVEEILYPALEDYQIDIMIGEGPAARSVRLDLQPFTLVGATTRAGMLTNPLRD 180 Query: 181 RFGIVARLEFYTPPELARIVTRSAGLLNAPIVEEGALEIAKRSRGTPRIANRLLRRVRDY 240 RFGIVARLEFYTP EL RIVTRS+ LLNAPI E+GA EIAKRSRGTPRIANRLLRRVRDY Sbjct: 181 RFGIVARLEFYTPLELTRIVTRSSSLLNAPIDEDGAFEIAKRSRGTPRIANRLLRRVRDY 240 Query: 241 AEVKGNGRITQAMADAALVMLDVDPVGFDVMDRKLLEAVLFKFNGGPVGLDNLAAAIGEE 300 AEVKGNG IT+AMADAALVMLDVDPVGFDVMDRKLLEAVLFKFNGGPVGLDNLAAAIGEE Sbjct: 241 AEVKGNGDITKAMADAALVMLDVDPVGFDVMDRKLLEAVLFKFNGGPVGLDNLAAAIGEE 300 Query: 301 RDTIEDVLEPYLIQQGYLQRTPRGRVATPLAYTHFGVTAPRTGPNGDLWAG 351 RDTIEDVLEPYLIQQG+LQRTPRGR+ATP+AY HFGVTAP+TGPNG+LW G Sbjct: 301 RDTIEDVLEPYLIQQGFLQRTPRGRIATPVAYAHFGVTAPQTGPNGELWGG 351 >F1VW56.1 F1VW56_9BURK Holliday junction DNA helicase RuvB Length = 351 Score = 644 bits (1660), Expect = 0.0, Method: Compositional matrix adjust. Identities = 321/349 (91%), Positives = 333/349 (95%) Query: 1 MSIQTDDFSEQRIIAATPASANEEAIERALRPKQLDEYVGQEKVRGQLEIFISAARQRGE 60 MSIQTD+F+EQRI A TPAS NEEAIERALRPKQLDEYVGQEK+R QL IFI+AA+QR E Sbjct: 1 MSIQTDNFTEQRITAPTPASPNEEAIERALRPKQLDEYVGQEKIRDQLSIFITAAKQRRE 60 Query: 61 ALDHTLLFGPPGLGKTTMAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFID 120 ALDHTLLFGPPGLGKTT+AHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFID Sbjct: 61 ALDHTLLFGPPGLGKTTLAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFID 120 Query: 121 EIHRLSPVVEEILYPALEDYQIDIMIGEGPAARSVRLDLQPFTLVGATTRAGMLTNPLRD 180 EIHRLSPVVEEILYPALEDYQIDIMIGEGPAARSVRLDLQPFTLVGATTRAGMLTNPLRD Sbjct: 121 EIHRLSPVVEEILYPALEDYQIDIMIGEGPAARSVRLDLQPFTLVGATTRAGMLTNPLRD 180 Query: 181 RFGIVARLEFYTPPELARIVTRSAGLLNAPIVEEGALEIAKRSRGTPRIANRLLRRVRDY 240 RFGIVARLEFYT ELARIVTRSA LLNAPI EGA EIAKRSRGTPRIANRLLRRVRDY Sbjct: 181 RFGIVARLEFYTATELARIVTRSASLLNAPIDPEGAFEIAKRSRGTPRIANRLLRRVRDY 240 Query: 241 AEVKGNGRITQAMADAALVMLDVDPVGFDVMDRKLLEAVLFKFNGGPVGLDNLAAAIGEE 300 AEVK NG IT+A ADAALVMLDVDPVGFD+MDRKLLEAVLFKF+GGPVGLDNLAAAIGEE Sbjct: 241 AEVKSNGDITKATADAALVMLDVDPVGFDLMDRKLLEAVLFKFSGGPVGLDNLAAAIGEE 300 Query: 301 RDTIEDVLEPYLIQQGYLQRTPRGRVATPLAYTHFGVTAPRTGPNGDLW 349 R+TIEDVLEPYLIQQGYLQRTPRGR+ATPLAYTHFGV APRTGPNG+LW Sbjct: 301 RETIEDVLEPYLIQQGYLQRTPRGRIATPLAYTHFGVAAPRTGPNGELW 349 >C3XB58.1 C3XB58_OXAFO Holliday junction ATP-dependent DNA helicase ruvB EC=3.6.4.12 Length = 355 Score = 603 bits (1555), Expect = e-170, Method: Compositional matrix adjust. Identities = 298/349 (85%), Positives = 320/349 (91%) Query: 1 MSIQTDDFSEQRIIAATPASANEEAIERALRPKQLDEYVGQEKVRGQLEIFISAARQRGE 60 MSIQTDDFSE+RII A+PAS NEEAIERALRPK L+EYVGQ K R QLEIFI+AA++R E Sbjct: 1 MSIQTDDFSEKRIIDASPASPNEEAIERALRPKLLNEYVGQHKTREQLEIFIAAAKKRNE 60 Query: 61 ALDHTLLFGPPGLGKTTMAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFID 120 ALDHTLLFGPPGLGKTT+AHIIAREMGVNLRQTSGPVLERAGDLAA+LTNLEANDVLFID Sbjct: 61 ALDHTLLFGPPGLGKTTLAHIIAREMGVNLRQTSGPVLERAGDLAAILTNLEANDVLFID 120 Query: 121 EIHRLSPVVEEILYPALEDYQIDIMIGEGPAARSVRLDLQPFTLVGATTRAGMLTNPLRD 180 EIHR+SPVVEEILYPALEDYQIDI+IGEGPAARSV+LDLQPFTL+GATTRAGMLTNPLRD Sbjct: 121 EIHRMSPVVEEILYPALEDYQIDILIGEGPAARSVKLDLQPFTLIGATTRAGMLTNPLRD 180 Query: 181 RFGIVARLEFYTPPELARIVTRSAGLLNAPIVEEGALEIAKRSRGTPRIANRLLRRVRDY 240 RFG+VARLEFY +L RIVTRSA LL APIVEEGA EIA+R+RGTPRIANRLLRRVRDY Sbjct: 181 RFGVVARLEFYDIDDLTRIVTRSAMLLKAPIVEEGAREIARRARGTPRIANRLLRRVRDY 240 Query: 241 AEVKGNGRITQAMADAALVMLDVDPVGFDVMDRKLLEAVLFKFNGGPVGLDNLAAAIGEE 300 AEVKG G+IT MADAAL MLDVDPVGFD+MDRKLLEAVLFKF+GGPVG+ NLAAAIGEE Sbjct: 241 AEVKGTGKITHDMADAALKMLDVDPVGFDLMDRKLLEAVLFKFSGGPVGIANLAAAIGEE 300 Query: 301 RDTIEDVLEPYLIQQGYLQRTPRGRVATPLAYTHFGVTAPRTGPNGDLW 349 DTIEDVLEPYLIQQGYLQRTPRGR+AT Y HFG+ AP PNG LW Sbjct: 301 VDTIEDVLEPYLIQQGYLQRTPRGRIATTATYRHFGIAAPAADPNGSLW 349