BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0079.p         (77 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IX64.1 D8IX64_HERSS Factor-for-inversion-stimulation transcrip...   146   9e-34
A6SUQ0.1 A6SUQ0_JANMA Transcriptional regulator, Fis family           132   2e-29
A4G1U5.1 A4G1U5_HERAR DNA-binding protein fis (Factor-for-invers...   131   3e-29
F1VW44.1 F1VW44_9BURK DNA-binding protein Fis                         130   6e-29
Q1LRB2.1 Q1LRB2_RALME Putative Fis-like DNA-binding protein           107   7e-22

>D8IX64.1 D8IX64_HERSS Factor-for-inversion-stimulation transcription
          regulator protein
          Length = 77

 Score =  146 bits (369), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 68/77 (88%), Positives = 75/77 (97%)

Query: 1  MSKESIEDVVRKSLDKYFKDLGEQLPSNVYDMVVLTVEKPIFEAVMARADGNQSQAAEIL 60
          MSKESIEDVV+KSL+KYF+DLGEQLP+NVYDMV+ TVEKP+FE VMARA+GNQSQAAEIL
Sbjct: 1  MSKESIEDVVKKSLEKYFRDLGEQLPTNVYDMVLATVEKPVFETVMARAEGNQSQAAEIL 60

Query: 61 GINRNTLRKKLQQHGLL 77
          GINRNTLRKKLQQHGLL
Sbjct: 61 GINRNTLRKKLQQHGLL 77


>A6SUQ0.1 A6SUQ0_JANMA Transcriptional regulator, Fis family
          Length = 126

 Score =  132 bits (331), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/77 (79%), Positives = 72/77 (93%)

Query: 1   MSKESIEDVVRKSLDKYFKDLGEQLPSNVYDMVVLTVEKPIFEAVMARADGNQSQAAEIL 60
           MSK++I++VV+KSL+KYFKDLGEQ+PSNVY+MVV TVEKPI EAVM RA+GNQS AA++L
Sbjct: 50  MSKDNIQEVVKKSLEKYFKDLGEQMPSNVYEMVVFTVEKPILEAVMERAEGNQSHAADML 109

Query: 61  GINRNTLRKKLQQHGLL 77
           GINRNTLRKKLQQH LL
Sbjct: 110 GINRNTLRKKLQQHDLL 126


>A4G1U5.1 A4G1U5_HERAR DNA-binding protein fis (Factor-for-inversion
          stimulation protein) (HIN recombinational enhancer
          binding protein)
          Length = 77

 Score =  131 bits (330), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 60/77 (77%), Positives = 72/77 (93%)

Query: 1  MSKESIEDVVRKSLDKYFKDLGEQLPSNVYDMVVLTVEKPIFEAVMARADGNQSQAAEIL 60
          MSK++I+DVV+KSL+KYF+DLGEQ+PSNVY+MVV TVEKPI EAVM RA+GNQS AA++L
Sbjct: 1  MSKDNIQDVVKKSLEKYFRDLGEQMPSNVYEMVVFTVEKPILEAVMERAEGNQSHAADML 60

Query: 61 GINRNTLRKKLQQHGLL 77
          GINRNTLRKKLQQH +L
Sbjct: 61 GINRNTLRKKLQQHDML 77


>F1VW44.1 F1VW44_9BURK DNA-binding protein Fis
          Length = 77

 Score =  130 bits (327), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 62/77 (80%), Positives = 70/77 (90%)

Query: 1  MSKESIEDVVRKSLDKYFKDLGEQLPSNVYDMVVLTVEKPIFEAVMARADGNQSQAAEIL 60
          MSKESI++VV+KSL+KYF+DLGEQ P+NVYDMVV+TVEKPI E VMARA GNQS AAE+L
Sbjct: 1  MSKESIQEVVKKSLEKYFRDLGEQHPTNVYDMVVVTVEKPILEVVMARAAGNQSLAAEML 60

Query: 61 GINRNTLRKKLQQHGLL 77
          GINRNTLRKKLQ H LL
Sbjct: 61 GINRNTLRKKLQLHSLL 77


>Q1LRB2.1 Q1LRB2_RALME Putative Fis-like DNA-binding protein
          Length = 77

 Score =  107 bits (266), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 49/77 (63%), Positives = 62/77 (80%)

Query: 1  MSKESIEDVVRKSLDKYFKDLGEQLPSNVYDMVVLTVEKPIFEAVMARADGNQSQAAEIL 60
          MS+ +I+  +R SLD YF+DL  ++PSN+Y+MV+  VE+P+ EAVM RA+ NQS AA  L
Sbjct: 1  MSRNAIDQCIRDSLDTYFRDLDGEVPSNMYNMVLEAVERPLLEAVMTRAERNQSLAAAYL 60

Query: 61 GINRNTLRKKLQQHGLL 77
          GINRNTLRKKLQQHGLL
Sbjct: 61 GINRNTLRKKLQQHGLL 77