BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0078.p         (117 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IX63.1 D8IX63_HERSS tRNA-dihydrouridine synthase EC=1.-.-.-         198   2e-49
A6SUP9.1 A6SUP9_JANMA tRNA-dihydrouridine synthase EC=1.-.-.-         183   8e-45
A4G1U4.1 A4G1U4_HERAR tRNA-dihydrouridine synthase EC=1.-.-.-         181   4e-44
F1VW43.1 F1VW43_9BURK tRNA-dihydrouridine synthase B                  179   1e-43
C5CL86.1 C5CL86_VARPS tRNA-dihydrouridine synthase EC=1.-.-.-         155   2e-36

>D8IX63.1 D8IX63_HERSS tRNA-dihydrouridine synthase EC=1.-.-.-
          Length = 340

 Score =  198 bits (504), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 91/116 (78%), Positives = 103/116 (88%)

Query: 1   MIGRAAQGRPWIFREIDHFLRTGTHLPAPMVAEVQELMLEHLQAHYAFYGEYLGVRTARK 60
           M+GRAAQGRPWIFREIDHFLRTG HLPAP+V+EV++LM EHLQAHYAFYG+YLGVRTARK
Sbjct: 222 MVGRAAQGRPWIFREIDHFLRTGEHLPAPLVSEVEQLMDEHLQAHYAFYGDYLGVRTARK 281

Query: 61  HIGWYVRDLPEGEQFRQRMNRLEDTQLQWNAVRDFFESQAAYGERLQYGIAGEALA 116
           HIGWYVRDLP GEQFR+ MNR+ED   Q  AVR FF SQAA+GERLQYG+A + +A
Sbjct: 282 HIGWYVRDLPGGEQFRRSMNRIEDCAQQLQAVRQFFASQAAFGERLQYGLAVDEVA 337


>A6SUP9.1 A6SUP9_JANMA tRNA-dihydrouridine synthase EC=1.-.-.-
          Length = 338

 Score =  183 bits (464), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 88/117 (75%), Positives = 99/117 (84%)

Query: 1   MIGRAAQGRPWIFREIDHFLRTGTHLPAPMVAEVQELMLEHLQAHYAFYGEYLGVRTARK 60
           MIGRAAQGRPWIFREI+H+LRTGT+LPAPM+AEV+ LM EHL+AHYAFYGEYLGVRTARK
Sbjct: 222 MIGRAAQGRPWIFREIEHYLRTGTYLPAPMIAEVRTLMDEHLRAHYAFYGEYLGVRTARK 281

Query: 61  HIGWYVRDLPEGEQFRQRMNRLEDTQLQWNAVRDFFESQAAYGERLQYGIAGEALAA 117
           HIGWYVR+L  GE FRQ+MN+LED + Q  AV  FFE Q A+GERLQY    E LAA
Sbjct: 282 HIGWYVRELVGGEAFRQQMNKLEDCEQQLAAVNTFFELQLAHGERLQYRPTAEKLAA 338


>A4G1U4.1 A4G1U4_HERAR tRNA-dihydrouridine synthase EC=1.-.-.-
          Length = 322

 Score =  181 bits (458), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 87/117 (74%), Positives = 98/117 (83%)

Query: 1   MIGRAAQGRPWIFREIDHFLRTGTHLPAPMVAEVQELMLEHLQAHYAFYGEYLGVRTARK 60
           MIGRAAQGRPWIFREI H+LRTGTHLPAP+++EV+ LM EHL+AHYAFYGEYLGVRTARK
Sbjct: 206 MIGRAAQGRPWIFREIVHYLRTGTHLPAPLISEVRTLMDEHLRAHYAFYGEYLGVRTARK 265

Query: 61  HIGWYVRDLPEGEQFRQRMNRLEDTQLQWNAVRDFFESQAAYGERLQYGIAGEALAA 117
           HIGWYVR+L +GE FRQ+MNRLED   Q  AV +FFE Q  +GERLQY    E LAA
Sbjct: 266 HIGWYVRELIDGEAFRQQMNRLEDCAQQLAAVNEFFELQLTHGERLQYRPTEEKLAA 322


>F1VW43.1 F1VW43_9BURK tRNA-dihydrouridine synthase B
          Length = 348

 Score =  179 bits (453), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 85/108 (78%), Positives = 91/108 (84%)

Query: 1   MIGRAAQGRPWIFREIDHFLRTGTHLPAPMVAEVQELMLEHLQAHYAFYGEYLGVRTARK 60
           MIGRAAQGRPWIFRE+ HFL+TGTHL AP+V+EV  LM EHL+AHYAFYGEYLGVRTARK
Sbjct: 232 MIGRAAQGRPWIFREVVHFLKTGTHLAAPLVSEVALLMDEHLRAHYAFYGEYLGVRTARK 291

Query: 61  HIGWYVRDLPEGEQFRQRMNRLEDTQLQWNAVRDFFESQAAYGERLQY 108
           HIGWYVRDL  GE FRQ MN LED + Q  AV DFFESQ  YGERLQY
Sbjct: 292 HIGWYVRDLAGGEDFRQSMNLLEDCEQQLAAVNDFFESQIRYGERLQY 339


>C5CL86.1 C5CL86_VARPS tRNA-dihydrouridine synthase EC=1.-.-.-
          Length = 352

 Score =  155 bits (392), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 74/116 (63%), Positives = 87/116 (75%)

Query: 1   MIGRAAQGRPWIFREIDHFLRTGTHLPAPMVAEVQELMLEHLQAHYAFYGEYLGVRTARK 60
           MIGRAAQGRPWIFREI HFL TGTHL  P+VAEV+ L+L+HL  HYA YGE+ GVRTARK
Sbjct: 227 MIGRAAQGRPWIFREIAHFLATGTHLAPPLVAEVRRLLLDHLVEHYALYGEFSGVRTARK 286

Query: 61  HIGWYVRDLPEGEQFRQRMNRLEDTQLQWNAVRDFFESQAAYGERLQYGIAGEALA 116
           HIGWYVR LP+GE FR RMN +ED+  Q  AV D+F+  A   +R+    A E L+
Sbjct: 287 HIGWYVRTLPDGEAFRARMNTIEDSAAQLRAVGDYFDGLADRMDRMPVHQAAEELS 342