BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0075.p         (211 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A6SUP9.1 A6SUP9_JANMA tRNA-dihydrouridine synthase EC=1.-.-.-         225   3e-57
D8IX63.1 D8IX63_HERSS tRNA-dihydrouridine synthase EC=1.-.-.-         222   2e-56
F1VW43.1 F1VW43_9BURK tRNA-dihydrouridine synthase B                  209   1e-52
A4G1U4.1 A4G1U4_HERAR tRNA-dihydrouridine synthase EC=1.-.-.-         208   4e-52
C3XB53.1 C3XB53_OXAFO tRNA-dihydrouridine synthase EC=1.-.-.-         199   2e-49

>A6SUP9.1 A6SUP9_JANMA tRNA-dihydrouridine synthase EC=1.-.-.-
          Length = 338

 Score =  225 bits (574), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 111/147 (75%), Positives = 123/147 (83%)

Query: 39  STPSTPATCNARARARARXIIDINMGCPVKKVCNSWCGSALLQNEKLVGRILDAVVNAVD 98
           + P   A C      R   IIDINMGCPVKKVCNSWCGSALLQ+E LV  IL+AVV +V+
Sbjct: 74  ADPVLLAECAKFNVDRGAQIIDINMGCPVKKVCNSWCGSALLQHESLVAEILEAVVASVN 133

Query: 99  VPVTLKFRTGWNRENKNALAIAAMAEQSGIAMLTLHGRTRADGYSGEAEYETIAAVKAAV 158
           VPVTLKFRTGW+R +KNAL IA +AEQSGIAMLTLHGRTRADGYSG+AEYETI AVKAAV
Sbjct: 134 VPVTLKFRTGWDRAHKNALNIARIAEQSGIAMLTLHGRTRADGYSGDAEYETITAVKAAV 193

Query: 159 KIPVVANGDITTPERAKHVLTVTGADA 185
            IPVVANGDITTPE+A++VL VTGADA
Sbjct: 194 SIPVVANGDITTPEKARYVLDVTGADA 220


>D8IX63.1 D8IX63_HERSS tRNA-dihydrouridine synthase EC=1.-.-.-
          Length = 340

 Score =  222 bits (566), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 117/147 (79%), Positives = 125/147 (85%)

Query: 39  STPSTPATCNARARARARXIIDINMGCPVKKVCNSWCGSALLQNEKLVGRILDAVVNAVD 98
           + P   A C      R   IIDINMGCPVKKVCNSWCGSALLQ+E+LV RILDAVV+AVD
Sbjct: 74  ADPVMLADCAKYNVERGAQIIDINMGCPVKKVCNSWCGSALLQDEELVARILDAVVSAVD 133

Query: 99  VPVTLKFRTGWNRENKNALAIAAMAEQSGIAMLTLHGRTRADGYSGEAEYETIAAVKAAV 158
           VPVTLKFRTGWNR NKNAL IAA AE +GIAMLTLHGRTRADGYSGEAEYETIAAVKAAV
Sbjct: 134 VPVTLKFRTGWNRANKNALKIAARAEAAGIAMLTLHGRTRADGYSGEAEYETIAAVKAAV 193

Query: 159 KIPVVANGDITTPERAKHVLTVTGADA 185
           KIPVVANGDITTPE+A+ VL +T ADA
Sbjct: 194 KIPVVANGDITTPEKARDVLLLTKADA 220


>F1VW43.1 F1VW43_9BURK tRNA-dihydrouridine synthase B
          Length = 348

 Score =  209 bits (533), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 112/147 (76%), Positives = 127/147 (86%)

Query: 39  STPSTPATCNARARARARXIIDINMGCPVKKVCNSWCGSALLQNEKLVGRILDAVVNAVD 98
           + P+  A C      R   +IDINMGCPVKKVCNSWCGSALLQ+E+LVG+ILDAVV AVD
Sbjct: 84  ADPAMLADCARFNVERGAQVIDINMGCPVKKVCNSWCGSALLQDERLVGQILDAVVAAVD 143

Query: 99  VPVTLKFRTGWNRENKNALAIAAMAEQSGIAMLTLHGRTRADGYSGEAEYETIAAVKAAV 158
           VPVTLKFRTGW+R++KNAL IA +A+ +GIAMLTLHGRTRADGY+G AEYETIAAVKAAV
Sbjct: 144 VPVTLKFRTGWDRQHKNALNIARLAQSAGIAMLTLHGRTRADGYNGAAEYETIAAVKAAV 203

Query: 159 KIPVVANGDITTPERAKHVLTVTGADA 185
            IPVVANGDITTPE+A+HVL VTGADA
Sbjct: 204 TIPVVANGDITTPEKARHVLAVTGADA 230


>A4G1U4.1 A4G1U4_HERAR tRNA-dihydrouridine synthase EC=1.-.-.-
          Length = 322

 Score =  208 bits (530), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 114/147 (77%), Positives = 120/147 (81%)

Query: 39  STPSTPATCNARARARARXIIDINMGCPVKKVCNSWCGSALLQNEKLVGRILDAVVNAVD 98
           + P   A C      R   IIDINMGCPVKKVCNSWCGSALLQ+E LV  IL AVV AVD
Sbjct: 58  ADPLMLAECAKFNVDRGAQIIDINMGCPVKKVCNSWCGSALLQHESLVAEILQAVVAAVD 117

Query: 99  VPVTLKFRTGWNRENKNALAIAAMAEQSGIAMLTLHGRTRADGYSGEAEYETIAAVKAAV 158
           VPVTLKFRTGW+R +KNAL IA +AEQSGIAMLTLHGRTRADGYSGEAEYE IAAVKAAV
Sbjct: 118 VPVTLKFRTGWDRAHKNALNIARIAEQSGIAMLTLHGRTRADGYSGEAEYEMIAAVKAAV 177

Query: 159 KIPVVANGDITTPERAKHVLTVTGADA 185
            IPVVANGDITTPE+AK VL  TGADA
Sbjct: 178 SIPVVANGDITTPEKAKFVLEATGADA 204


>C3XB53.1 C3XB53_OXAFO tRNA-dihydrouridine synthase EC=1.-.-.-
          Length = 324

 Score =  199 bits (506), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 110/179 (61%), Positives = 125/179 (69%), Gaps = 8/179 (4%)

Query: 13  ATSTSRSTPKGSGRRRRWAGRSVTSRSTP---STPATCNARARA---RARXIIDINMGCP 66
           A    R+TPK   RRR      V  R+     S PAT    AR    +   IIDINMGCP
Sbjct: 44  ANPLLRNTPKS--RRRIIHEGEVEPRAVQIVGSDPATMADSARYNVDQGAQIIDINMGCP 101

Query: 67  VKKVCNSWCGSALLQNEKLVGRILDAVVNAVDVPVTLKFRTGWNRENKNALAIAAMAEQS 126
            KKVCN+WCGSALLQNE LVG+IL+AV +AV VPVTLKFRTGW+R + NA  IA +AE +
Sbjct: 102 AKKVCNNWCGSALLQNEPLVGQILEAVTDAVSVPVTLKFRTGWDRSHINAPEIAKIAESA 161

Query: 127 GIAMLTLHGRTRADGYSGEAEYETIAAVKAAVKIPVVANGDITTPERAKHVLTVTGADA 185
           GIA LTLHGRTR D Y G AEY+TIA VK+ V IPVVANGDI +PE+AK VL  TGADA
Sbjct: 162 GIAALTLHGRTREDAYRGMAEYDTIAEVKSLVSIPVVANGDIDSPEKAKAVLEKTGADA 220