BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0065.p         (58 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A4G8N3.1 AROE_HERAR Shikimate dehydrogenase EC=1.1.1.25                92   2e-17
D8IX51.1 D8IX51_HERSS Shikimate dehydrogenase EC=1.1.1.25              89   3e-16
F1W4U1.1 F1W4U1_9BURK Shikimate 5-dehydrogenase I alpha                88   4e-16
D8N6N8.1 D8N6N8_RALSO Shikimate dehydrogenase EC=1.1.1.25              86   2e-15
Q8XVQ3.1 Q8XVQ3_RALSO Probable shikimate 5-dehydrogenase oxidore...    86   2e-15

>A4G8N3.1 AROE_HERAR Shikimate dehydrogenase EC=1.1.1.25
          Length = 273

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 43/56 (76%), Positives = 45/56 (80%)

Query: 1   MYGKQPTVFMEFAHRHGAVTRDGLGMLVEQAAEAFLLWRGVRPETAGVFTALRRQL 56
           MYG QPT FM FA +HGA  RDGLGMLVEQAAE+F LWRGVRPETA VF  LR QL
Sbjct: 218 MYGAQPTAFMRFAAQHGATVRDGLGMLVEQAAESFYLWRGVRPETAAVFAELRAQL 273


>D8IX51.1 D8IX51_HERSS Shikimate dehydrogenase EC=1.1.1.25
          Length = 271

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 43/58 (74%), Positives = 48/58 (82%)

Query: 1   MYGKQPTVFMEFAHRHGAVTRDGLGMLVEQAAEAFLLWRGVRPETAGVFTALRRQLSQ 58
           MYG+ PTVFM+ A +HGA  RDGLGMLVEQAAEAF  WRGVRP TA VF +LR+QLSQ
Sbjct: 214 MYGRGPTVFMQSAQQHGAHVRDGLGMLVEQAAEAFQWWRGVRPATAEVFASLRQQLSQ 271


>F1W4U1.1 F1W4U1_9BURK Shikimate 5-dehydrogenase I alpha
          Length = 76

 Score = 88.2 bits (217), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 41/56 (73%), Positives = 45/56 (80%)

Query: 1  MYGKQPTVFMEFAHRHGAVTRDGLGMLVEQAAEAFLLWRGVRPETAGVFTALRRQL 56
          MYG QPT+F+ FA +HGA  RDGLGMLVEQAAE+FLLWRGVRPETA V   LR  L
Sbjct: 19 MYGTQPTIFLRFAAQHGAKVRDGLGMLVEQAAESFLLWRGVRPETAAVLAGLRAAL 74


>D8N6N8.1 D8N6N8_RALSO Shikimate dehydrogenase EC=1.1.1.25
          Length = 306

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/56 (71%), Positives = 46/56 (82%)

Query: 1   MYGKQPTVFMEFAHRHGAVTRDGLGMLVEQAAEAFLLWRGVRPETAGVFTALRRQL 56
           MYG QPTVFM+FA RHGA   DGLGMLVEQAAE+FL+WRG+RP+TA V  A+R  L
Sbjct: 238 MYGSQPTVFMQFAKRHGARAWDGLGMLVEQAAESFLVWRGMRPDTAPVLQAMREGL 293


>Q8XVQ3.1 Q8XVQ3_RALSO Probable shikimate 5-dehydrogenase oxidoreductase
           protein EC=1.1.1.25
          Length = 306

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/56 (71%), Positives = 46/56 (82%)

Query: 1   MYGKQPTVFMEFAHRHGAVTRDGLGMLVEQAAEAFLLWRGVRPETAGVFTALRRQL 56
           MYG QPTVFM+FA RHGA   DGLGMLVEQAAE+FL+WRG+RP+TA V  A+R  L
Sbjct: 238 MYGSQPTVFMQFAKRHGARAWDGLGMLVEQAAESFLVWRGMRPDTAPVLQAMREGL 293