BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0064.p         (93 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IX51.1 D8IX51_HERSS Shikimate dehydrogenase EC=1.1.1.25             145   2e-33
A6T2A5.1 AROE_JANMA Shikimate dehydrogenase EC=1.1.1.25               128   3e-28
Q0BIF0.1 Q0BIF0_BURCM Shikimate dehydrogenase 1 EC=1.1.1.25           127   6e-28
B1YSX4.1 B1YSX4_BURA4 Shikimate dehydrogenase 1 EC=1.1.1.25           127   7e-28
A4JBE6.1 A4JBE6_BURVG Shikimate dehydrogenase 1 EC=1.1.1.25           126   9e-28

>D8IX51.1 D8IX51_HERSS Shikimate dehydrogenase EC=1.1.1.25
          Length = 271

 Score =  145 bits (366), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 69/85 (81%), Positives = 77/85 (90%)

Query: 1  MDAYVVIGNPIAHSKSPEIHAQFAAQTAQQLSYERLLAPLQGFKAAVKVFIANGGKGANV 60
          MD YVVIGNPIAHSKSP+IHA+FAAQT Q +SYERLL PL GFKAAV+VF   GG+GAN+
Sbjct: 1  MDEYVVIGNPIAHSKSPDIHARFAAQTGQSMSYERLLVPLHGFKAAVQVFQRRGGRGANI 60

Query: 61 TVPFKLDAHALADRLTERARLAGAV 85
          TVPFKL+AHALAD+LTERARLAGAV
Sbjct: 61 TVPFKLEAHALADQLTERARLAGAV 85


>A6T2A5.1 AROE_JANMA Shikimate dehydrogenase EC=1.1.1.25
          Length = 273

 Score =  128 bits (321), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 62/89 (69%), Positives = 73/89 (82%)

Query: 2  DAYVVIGNPIAHSKSPEIHAQFAAQTAQQLSYERLLAPLQGFKAAVKVFIANGGKGANVT 61
          D Y VIGNPIAHSKSP+IHA+FAAQT Q L Y+RLLAPL GF A+V+ FI N GKG NVT
Sbjct: 6  DHYAVIGNPIAHSKSPDIHARFAAQTQQDLKYDRLLAPLDGFLASVQEFIRNDGKGLNVT 65

Query: 62 VPFKLDAHALADRLTERARLAGAVXAPRW 90
          VPFKL+A+A+A RL+ERAR AGAV   ++
Sbjct: 66 VPFKLEAYAMASRLSERARAAGAVNTLKF 94


>Q0BIF0.1 Q0BIF0_BURCM Shikimate dehydrogenase 1 EC=1.1.1.25
          Length = 288

 Score =  127 bits (319), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 61/90 (67%), Positives = 73/90 (81%)

Query: 1  MDAYVVIGNPIAHSKSPEIHAQFAAQTAQQLSYERLLAPLQGFKAAVKVFIANGGKGANV 60
          +D YVV GNP+AHSKSP IHAQFAAQT + ++YE  LAP+ GF+AAV+ F+A GG+GANV
Sbjct: 10 VDRYVVFGNPVAHSKSPFIHAQFAAQTGEAITYEHRLAPVDGFEAAVRAFVAEGGRGANV 69

Query: 61 TVPFKLDAHALADRLTERARLAGAVXAPRW 90
          TVPFKLDAHALAD L+ RA  AGAV   R+
Sbjct: 70 TVPFKLDAHALADTLSPRAAAAGAVNTLRF 99


>B1YSX4.1 B1YSX4_BURA4 Shikimate dehydrogenase 1 EC=1.1.1.25
          Length = 288

 Score =  127 bits (318), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 61/89 (68%), Positives = 72/89 (80%)

Query: 2  DAYVVIGNPIAHSKSPEIHAQFAAQTAQQLSYERLLAPLQGFKAAVKVFIANGGKGANVT 61
          D YVV GNP+AHSKSP IHAQFAAQT + ++YE  LAP+ GF+AAV+ F+A GG+GANVT
Sbjct: 11 DRYVVFGNPVAHSKSPFIHAQFAAQTGEAITYEHRLAPVDGFEAAVRAFVAEGGRGANVT 70

Query: 62 VPFKLDAHALADRLTERARLAGAVXAPRW 90
          VPFKLDAHALAD L+ RA  AGAV   R+
Sbjct: 71 VPFKLDAHALADTLSPRAAAAGAVNTLRF 99


>A4JBE6.1 A4JBE6_BURVG Shikimate dehydrogenase 1 EC=1.1.1.25
          Length = 288

 Score =  126 bits (317), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 63/88 (71%), Positives = 70/88 (79%)

Query: 2  DAYVVIGNPIAHSKSPEIHAQFAAQTAQQLSYERLLAPLQGFKAAVKVFIANGGKGANVT 61
          D YVV GNP+AHSKSP IHAQFAAQT Q L YE  LAP+ GF+AAV+ F+A GG+GANVT
Sbjct: 11 DRYVVFGNPVAHSKSPFIHAQFAAQTGQALVYEHRLAPVDGFEAAVRAFVAEGGRGANVT 70

Query: 62 VPFKLDAHALADRLTERARLAGAVXAPR 89
          VPFKLDAHALAD L+ RA  AGAV   R
Sbjct: 71 VPFKLDAHALADTLSPRAAAAGAVNTLR 98