BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0046.p         (175 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IWA7.1 D8IWA7_HERSS Ribonucleoside-diphosphate reductase EC=1....   285   1e-75
A4G8Q0.1 A4G8Q0_HERAR Ribonucleoside-diphosphate reductase EC=1....   279   8e-74
F1VVF9.1 F1VVF9_9BURK Ribonucleotide reductase of class Ia (Aero...   276   8e-73
C6BDX3.1 C6BDX3_RALP1 Ribonucleoside-diphosphate reductase EC=1....   272   2e-71
E2T4Z7.1 E2T4Z7_9RALS Ribonucleoside-diphosphate reductase EC=1....   272   2e-71

>D8IWA7.1 D8IWA7_HERSS Ribonucleoside-diphosphate reductase EC=1.17.4.1
          Length = 994

 Score =  285 bits (730), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 141/182 (77%), Positives = 151/182 (82%), Gaps = 7/182 (3%)

Query: 1   VRDLKARGLWDEVMISDLKYFDGSLAKIDRIPQDLRDIYATAFEVEPSWLVEAASRRQKW 60
           VRDLKARGLWDEVM++DLKYFDGSLAKIDRIPQDLRDIYATAFEV+PSWLVEAASRRQKW
Sbjct: 813 VRDLKARGLWDEVMVADLKYFDGSLAKIDRIPQDLRDIYATAFEVDPSWLVEAASRRQKW 872

Query: 61  IDQAQSLNIYMAGASGKRLDETYKLAWLRGLKTTYYLRTIGATHTEKSTSKTGALNAVAV 120
           IDQAQSLNIYMAGASGKRLDETYKLAWLRGLKTTYYLRTIGATHTEKSTS+ GALNAVAV
Sbjct: 873 IDQAQSLNIYMAGASGKRLDETYKLAWLRGLKTTYYLRTIGATHTEKSTSRAGALNAVAV 932

Query: 121 DGGVSHSAAAASAPASMTASAASMATVA-------AAEVEADGAACYLRPGDDGFEECEA 173
           DGG    A+A+         A++    A        A +EADG  C +RPGD GFEECEA
Sbjct: 933 DGGAGAMASASGTAVPAAPIASAATASAAYVMPNPGAAIEADGPVCTMRPGDAGFEECEA 992

Query: 174 CQ 175
           CQ
Sbjct: 993 CQ 994


>A4G8Q0.1 A4G8Q0_HERAR Ribonucleoside-diphosphate reductase EC=1.17.4.1
          Length = 966

 Score =  279 bits (714), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 138/175 (78%), Positives = 145/175 (82%), Gaps = 20/175 (11%)

Query: 1   VRDLKARGLWDEVMISDLKYFDGSLAKIDRIPQDLRDIYATAFEVEPSWLVEAASRRQKW 60
           VRDLKARGLWDEVMISDLKYFDGSLAKIDRIPQDLRDIYATAFEVEPSWLVEAASRRQKW
Sbjct: 812 VRDLKARGLWDEVMISDLKYFDGSLAKIDRIPQDLRDIYATAFEVEPSWLVEAASRRQKW 871

Query: 61  IDQAQSLNIYMAGASGKRLDETYKLAWLRGLKTTYYLRTIGATHTEKSTSKTGALNAVAV 120
           IDQAQSLNIYM+GASGK+LD+TYKLAWLRGLKTTYYLRT+GATHTEKSTSKTGALNAV  
Sbjct: 872 IDQAQSLNIYMSGASGKKLDDTYKLAWLRGLKTTYYLRTMGATHTEKSTSKTGALNAVDS 931

Query: 121 DGGVSHSAAAASAPASMTASAASMATVAAAEVEADGAACYLRPGDDGFEECEACQ 175
            GG S +A +A+                    E DG AC LRPGD GFEECEACQ
Sbjct: 932 GGGSSTAAQSAA--------------------ETDGPACILRPGDAGFEECEACQ 966


>F1VVF9.1 F1VVF9_9BURK Ribonucleotide reductase of class Ia (Aerobic), alpha
           subunit
          Length = 969

 Score =  276 bits (706), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 132/175 (75%), Positives = 145/175 (82%), Gaps = 15/175 (8%)

Query: 1   VRDLKARGLWDEVMISDLKYFDGSLAKIDRIPQDLRDIYATAFEVEPSWLVEAASRRQKW 60
           VRDLKAR LWDEVMISDLKYFDGSLA+IDR+PQ+LR IYATAFE+EPSWLVEAASRRQKW
Sbjct: 810 VRDLKARDLWDEVMISDLKYFDGSLARIDRVPQELRAIYATAFEIEPSWLVEAASRRQKW 869

Query: 61  IDQAQSLNIYMAGASGKRLDETYKLAWLRGLKTTYYLRTIGATHTEKSTSKTGALNAVAV 120
           IDQAQSLNIYMAGASGK+LDETYKLAWLRGLKTTYYLRTIGATHTEKSTSKTG+LNAV+ 
Sbjct: 870 IDQAQSLNIYMAGASGKKLDETYKLAWLRGLKTTYYLRTIGATHTEKSTSKTGSLNAVSA 929

Query: 121 DGGVSHSAAAASAPASMTASAASMATVAAAEVEADGAACYLRPGDDGFEECEACQ 175
           DG                +S  +++    A  + DG +C LRPGDDGFEECEACQ
Sbjct: 930 DG---------------VSSGVALSAYTTAGADVDGPSCVLRPGDDGFEECEACQ 969


>C6BDX3.1 C6BDX3_RALP1 Ribonucleoside-diphosphate reductase EC=1.17.4.1
          Length = 994

 Score =  272 bits (695), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 134/178 (75%), Positives = 149/178 (83%), Gaps = 3/178 (1%)

Query: 1   VRDLKARGLWDEVMISDLKYFDGSLAKIDRIPQDLRDIYATAFEVEPSWLVEAASRRQKW 60
           VRDLKARGLWDEVM++DLKYFDGSLA+IDRIPQDLRD+YATAFEVEP WLVEAASRRQKW
Sbjct: 817 VRDLKARGLWDEVMVADLKYFDGSLARIDRIPQDLRDLYATAFEVEPQWLVEAASRRQKW 876

Query: 61  IDQAQSLNIYMAGASGKRLDETYKLAWLRGLKTTYYLRTIGATHTEKSTSKTGALNAVAV 120
           IDQAQSLNIYMAGASGK+LD+TYKLAWLRGLKTTYYLRTIGATH EKST   G LNAV+ 
Sbjct: 877 IDQAQSLNIYMAGASGKKLDDTYKLAWLRGLKTTYYLRTIGATHVEKSTVSRGTLNAVSS 936

Query: 121 D---GGVSHSAAAASAPASMTASAASMATVAAAEVEADGAACYLRPGDDGFEECEACQ 175
               GGVS + A+    A+ T++  + A  A A  EA+GA C +RPGD GFEECEACQ
Sbjct: 937 GSDVGGVSAAGASGVTSAAPTSALDAAAATAQAMPEAEGAVCTMRPGDPGFEECEACQ 994


>E2T4Z7.1 E2T4Z7_9RALS Ribonucleoside-diphosphate reductase EC=1.17.4.1
          Length = 994

 Score =  272 bits (695), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 134/178 (75%), Positives = 149/178 (83%), Gaps = 3/178 (1%)

Query: 1   VRDLKARGLWDEVMISDLKYFDGSLAKIDRIPQDLRDIYATAFEVEPSWLVEAASRRQKW 60
           VRDLKARGLWDEVM++DLKYFDGSLA+IDRIPQDLRD+YATAFEVEP WLVEAASRRQKW
Sbjct: 817 VRDLKARGLWDEVMVADLKYFDGSLARIDRIPQDLRDLYATAFEVEPQWLVEAASRRQKW 876

Query: 61  IDQAQSLNIYMAGASGKRLDETYKLAWLRGLKTTYYLRTIGATHTEKSTSKTGALNAVAV 120
           IDQAQSLNIYMAGASGK+LD+TYKLAWLRGLKTTYYLRTIGATH EKST   G LNAV+ 
Sbjct: 877 IDQAQSLNIYMAGASGKKLDDTYKLAWLRGLKTTYYLRTIGATHVEKSTVSRGTLNAVSS 936

Query: 121 D---GGVSHSAAAASAPASMTASAASMATVAAAEVEADGAACYLRPGDDGFEECEACQ 175
               GGVS + A+    A+ T++  + A  A A  EA+GA C +RPGD GFEECEACQ
Sbjct: 937 GSDVGGVSAAGASGVTSAAPTSALDAAAATAQAMPEAEGAVCTMRPGDPGFEECEACQ 994