BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0045.p         (329 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IWA7.1 D8IWA7_HERSS Ribonucleoside-diphosphate reductase EC=1....   535   e-150
A6T2C2.1 A6T2C2_JANMA Ribonucleoside-diphosphate reductase EC=1....   522   e-146
A4G8Q0.1 A4G8Q0_HERAR Ribonucleoside-diphosphate reductase EC=1....   518   e-145
F1VVF9.1 F1VVF9_9BURK Ribonucleotide reductase of class Ia (Aero...   498   e-139
D8NY05.1 D8NY05_RALSO Ribonucleoside-diphosphate reductase EC=1....   484   e-134

>D8IWA7.1 D8IWA7_HERSS Ribonucleoside-diphosphate reductase EC=1.17.4.1
          Length = 994

 Score =  535 bits (1379), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 247/260 (95%), Positives = 255/260 (98%)

Query: 1   MNTANWIPDLFMKRVMEKGEWTLFSPSDAPDLHDKFGKAFEEAYTGYEAKAARGELKLFK 60
           MNTANWIPDLFMKRVMEKGEWTLFSPSD PDLHDKFG+AFEEAYT YEAKAARGELKLFK
Sbjct: 484 MNTANWIPDLFMKRVMEKGEWTLFSPSDTPDLHDKFGRAFEEAYTAYEAKAARGELKLFK 543

Query: 61  KIAALDLWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNESEIA 120
           K+ A DLWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTN+SEIA
Sbjct: 544 KVQANDLWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNDSEIA 603

Query: 121 VCNLGSVNMPAHLVNGEIDHAKLQKTIRTAMRMLDNVIDINYYAVKKARDSNLRHRPVGL 180
           VCNLGSVN+PAHLVNGE+DHAKLQKTIRTAMRMLDNVIDINYYAVKKARDSNLRHRPVG+
Sbjct: 604 VCNLGSVNLPAHLVNGELDHAKLQKTIRTAMRMLDNVIDINYYAVKKARDSNLRHRPVGM 663

Query: 181 GIMGFQDCLHMKRVPYASMDAVEFADRSMEAVCYYAYWASTELAEERGRYSSYRGSLWDR 240
           GIMGFQDCLH+KRVPYASMDAVEFADRSMEAVCYYAY ASTELAEERGRY+SYRGSLWDR
Sbjct: 664 GIMGFQDCLHIKRVPYASMDAVEFADRSMEAVCYYAYMASTELAEERGRYASYRGSLWDR 723

Query: 241 GILPQDSLKLLAQERGGYLE 260
           GILPQDSLKLLAQERGGYLE
Sbjct: 724 GILPQDSLKLLAQERGGYLE 743


>A6T2C2.1 A6T2C2_JANMA Ribonucleoside-diphosphate reductase EC=1.17.4.1
          Length = 963

 Score =  522 bits (1345), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 241/260 (92%), Positives = 252/260 (96%)

Query: 1   MNTANWIPDLFMKRVMEKGEWTLFSPSDAPDLHDKFGKAFEEAYTGYEAKAARGELKLFK 60
           MNTANWIPDLFMKRVMEKGEWTLFSPSDAPDLHDK GKAFE AYTGYEAKAARGELKLFK
Sbjct: 481 MNTANWIPDLFMKRVMEKGEWTLFSPSDAPDLHDKVGKAFEAAYTGYEAKAARGELKLFK 540

Query: 61  KIAALDLWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNESEIA 120
           KI ALDLWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTN+SEIA
Sbjct: 541 KIQALDLWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNDSEIA 600

Query: 121 VCNLGSVNMPAHLVNGEIDHAKLQKTIRTAMRMLDNVIDINYYAVKKARDSNLRHRPVGL 180
           VCNLGSVNMPAH+ +G++DH KLQKT+RTAMRMLDNVIDINYYAVKKARDSNLRHRPVGL
Sbjct: 601 VCNLGSVNMPAHMKDGQLDHVKLQKTVRTAMRMLDNVIDINYYAVKKARDSNLRHRPVGL 660

Query: 181 GIMGFQDCLHMKRVPYASMDAVEFADRSMEAVCYYAYWASTELAEERGRYSSYRGSLWDR 240
           GIMGFQDCLHM R+PYAS +AV+FADRSMEAVCYYAY+ASTELAEERGRYSSYRGSLWDR
Sbjct: 661 GIMGFQDCLHMMRIPYASDEAVQFADRSMEAVCYYAYYASTELAEERGRYSSYRGSLWDR 720

Query: 241 GILPQDSLKLLAQERGGYLE 260
           GILPQDSLKLL +ERGGYLE
Sbjct: 721 GILPQDSLKLLQEERGGYLE 740


>A4G8Q0.1 A4G8Q0_HERAR Ribonucleoside-diphosphate reductase EC=1.17.4.1
          Length = 966

 Score =  518 bits (1333), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 241/261 (92%), Positives = 250/261 (95%), Gaps = 1/261 (0%)

Query: 1   MNTANWIPDLFMKRVMEKGEWTLFSPSDAPDLHDKFGKAFEEAYTGYEAKAARGELKLFK 60
           MNTANWIPDLFMKRVMEKGEWTLFSPSDAPDLHDK GKAFEEAYTGYEAKAARGELKLFK
Sbjct: 482 MNTANWIPDLFMKRVMEKGEWTLFSPSDAPDLHDKVGKAFEEAYTGYEAKAARGELKLFK 541

Query: 61  KIAALDLWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNESEIA 120
           KI ALDLWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNESEIA
Sbjct: 542 KIQALDLWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNESEIA 601

Query: 121 VCNLGSVNMPAHLVNGEIDHAKLQKTIRTAMRMLDNVIDINYYAVKKARDSNLRHRPVGL 180
           VCNLGSVNMPAH+ +G++DH KLQKTIRTAMRMLDNVIDINYYAV KARDSNLRHRPVG+
Sbjct: 602 VCNLGSVNMPAHMKDGKLDHVKLQKTIRTAMRMLDNVIDINYYAVNKARDSNLRHRPVGM 661

Query: 181 GIMGFQDCLHMKRVPYASMDAVEFADRSMEAVCYYAYWASTELAEERGRYSSYRGSLWDR 240
           GIMGFQDCLHM R+PYAS DAV+FAD SMEAVCYYAY+ASTELAEERGRYSSY+GSLWDR
Sbjct: 662 GIMGFQDCLHMMRIPYASNDAVQFADNSMEAVCYYAYYASTELAEERGRYSSYKGSLWDR 721

Query: 241 GILPQDSLKLLAQERGG-YLE 260
           GILPQDSLKLLA ERG  YLE
Sbjct: 722 GILPQDSLKLLADERGAKYLE 742


>F1VVF9.1 F1VVF9_9BURK Ribonucleotide reductase of class Ia (Aerobic), alpha
           subunit
          Length = 969

 Score =  498 bits (1283), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 227/260 (87%), Positives = 244/260 (93%)

Query: 1   MNTANWIPDLFMKRVMEKGEWTLFSPSDAPDLHDKFGKAFEEAYTGYEAKAARGELKLFK 60
           MNTANWIPDLFMKRVMEKG W LFSPS+ PDLHDK G+AFE AYTGYEA AARGEL++FK
Sbjct: 481 MNTANWIPDLFMKRVMEKGSWMLFSPSEVPDLHDKVGRAFEAAYTGYEAAAARGELRMFK 540

Query: 61  KIAALDLWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNESEIA 120
           K+ ALDLWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNESEIA
Sbjct: 541 KVEALDLWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNESEIA 600

Query: 121 VCNLGSVNMPAHLVNGEIDHAKLQKTIRTAMRMLDNVIDINYYAVKKARDSNLRHRPVGL 180
           VCNLGSVN+PAH+ +G++DH KLQKTIR AMRMLDNVIDINYYAV+KARDSN+RHRPVGL
Sbjct: 601 VCNLGSVNLPAHMKDGQLDHVKLQKTIRIAMRMLDNVIDINYYAVQKARDSNMRHRPVGL 660

Query: 181 GIMGFQDCLHMKRVPYASMDAVEFADRSMEAVCYYAYWASTELAEERGRYSSYRGSLWDR 240
           GIMGFQDCLH+ RVPYAS +AV FAD+SMEAVCYYAY ASTELAEERG YSSY+GSLWDR
Sbjct: 661 GIMGFQDCLHIMRVPYASAEAVSFADKSMEAVCYYAYTASTELAEERGAYSSYKGSLWDR 720

Query: 241 GILPQDSLKLLAQERGGYLE 260
           GILPQDSLKLL +ERGGYLE
Sbjct: 721 GILPQDSLKLLMEERGGYLE 740


>D8NY05.1 D8NY05_RALSO Ribonucleoside-diphosphate reductase EC=1.17.4.1
          Length = 987

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 227/265 (85%), Positives = 241/265 (90%), Gaps = 5/265 (1%)

Query: 1   MNTANWIPDLFMKRVMEKGEWTLFSPSDAPDLHDKFGKAFEEAYTGYEAKAARGELKLFK 60
           MNTANWIPDLFMKRVME GEWTLFSPS  PDLHDK GKAFE AY GYE K ARGE+KLFK
Sbjct: 479 MNTANWIPDLFMKRVMENGEWTLFSPSTCPDLHDKVGKAFETAYLGYEEKVARGEIKLFK 538

Query: 61  KIAALDLWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNESEIA 120
           K+ A+ LWRKML MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTN+SEIA
Sbjct: 539 KMPAMQLWRKMLGMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNDSEIA 598

Query: 121 VCNLGSVNMPAHLV---NGEI--DHAKLQKTIRTAMRMLDNVIDINYYAVKKARDSNLRH 175
           VCNLGSVN+ AHLV   +G +  DH KL+KT+RTAMRMLDNVIDINYYAVKKARDSNLRH
Sbjct: 599 VCNLGSVNLVAHLVTQADGSVALDHDKLKKTVRTAMRMLDNVIDINYYAVKKARDSNLRH 658

Query: 176 RPVGLGIMGFQDCLHMKRVPYASMDAVEFADRSMEAVCYYAYWASTELAEERGRYSSYRG 235
           RPVGLGIMGFQD LH+ R+PYAS  AV+FAD SMEAVCYYAYWASTELAEERGRYS+Y+G
Sbjct: 659 RPVGLGIMGFQDALHVLRIPYASDAAVQFADNSMEAVCYYAYWASTELAEERGRYSTYKG 718

Query: 236 SLWDRGILPQDSLKLLAQERGGYLE 260
           SLWDRGILPQDSLKLLAQERGGYLE
Sbjct: 719 SLWDRGILPQDSLKLLAQERGGYLE 743