BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0036.p         (376 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IWA0.1 D8IWA0_HERSS Signal recognition particle subunit SRP54 ...   492   e-137
A6T2C8.1 A6T2C8_JANMA Signal recognition particle, subunit SRP54      487   e-135
A4G8Q6.2 A4G8Q6_HERAR Signal recognition particle protein (Fifty...   487   e-135
F1VU61.1 F1VU61_9BURK Signal recognition particle, subunit Ffh S...   452   e-125
B5WSQ0.1 B5WSQ0_9BURK Signal recognition particle protein             429   e-118

>D8IWA0.1 D8IWA0_HERSS Signal recognition particle subunit SRP54 protein
          Length = 456

 Score =  492 bits (1267), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 243/261 (93%), Positives = 255/261 (97%)

Query: 1   MLDNLTQRLAKVVKTMRGEARLTESNTAEMLREVRLALLEADVALPAVREFIAKVKERSV 60
           MLDNLTQRLAKVVKTMRGEARLTESNTAEMLREVRLALLEADVALPAVREFIAKVKE+++
Sbjct: 1   MLDNLTQRLAKVVKTMRGEARLTESNTAEMLREVRLALLEADVALPAVREFIAKVKEKAL 60

Query: 61  GEEVIGSLTPGQALVGVVQRELASLMGADLGPEASQLNFATQPPAIILMAGLQGAGKTTT 120
           GEEVIGSLTPGQALVGVVQRELASLMGADLGPEASQLNFATQPPAIILMAGLQGAGKTTT
Sbjct: 61  GEEVIGSLTPGQALVGVVQRELASLMGADLGPEASQLNFATQPPAIILMAGLQGAGKTTT 120

Query: 121 VGKLAKYLRENTRKKVLTVSADVYRPAAIGQLETVTAQAGADFFPTKTTDKPVDIALAAL 180
           VGKLAKYLRE T+KKVLTVSADVYRPAAIGQLETVT QAGADFFP++ TDKPVDIALAAL
Sbjct: 121 VGKLAKYLRETTKKKVLTVSADVYRPAAIGQLETVTGQAGADFFPSQATDKPVDIALAAL 180

Query: 181 DYAKRHFHDVLIIDTAGRLGIDEAMMQEISAVHAAVKPIETLFVVDAMLGQDAINTAKAF 240
           DYAK+H H+VLI+DTAGRLGID+AMM EI AVHAA+KPIETLFVVDAMLGQDAINTAKAF
Sbjct: 181 DYAKKHHHEVLIVDTAGRLGIDQAMMDEIRAVHAAIKPIETLFVVDAMLGQDAINTAKAF 240

Query: 241 SDALPLTGIVLTKLDGDSRGG 261
           SDALPLTG+VLTKLDGDSRGG
Sbjct: 241 SDALPLTGVVLTKLDGDSRGG 261


>A6T2C8.1 A6T2C8_JANMA Signal recognition particle, subunit SRP54
          Length = 455

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 239/261 (91%), Positives = 254/261 (97%)

Query: 1   MLDNLTQRLAKVVKTMRGEARLTESNTAEMLREVRLALLEADVALPAVREFIAKVKERSV 60
           MLDNLTQRLAK VKTMRGEARLTE+NTAEMLREVRLALLEADVALPAVREFI++VKE+++
Sbjct: 1   MLDNLTQRLAKAVKTMRGEARLTETNTAEMLREVRLALLEADVALPAVREFISRVKEKAM 60

Query: 61  GEEVIGSLTPGQALVGVVQRELASLMGADLGPEASQLNFATQPPAIILMAGLQGAGKTTT 120
           GE+V+GSLTPGQALVGVVQRELA++MGADLGPEASQLNFATQPPAIILMAGLQGAGKTTT
Sbjct: 61  GEDVVGSLTPGQALVGVVQRELAAIMGADLGPEASQLNFATQPPAIILMAGLQGAGKTTT 120

Query: 121 VGKLAKYLRENTRKKVLTVSADVYRPAAIGQLETVTAQAGADFFPTKTTDKPVDIALAAL 180
           VGKLAKYLRE  +KKVLTVSADVYRPAAIGQLETVTAQ GADFFP++ TDKPVDIALAAL
Sbjct: 121 VGKLAKYLREQKKKKVLTVSADVYRPAAIGQLETVTAQVGADFFPSQATDKPVDIALAAL 180

Query: 181 DYAKRHFHDVLIIDTAGRLGIDEAMMQEISAVHAAVKPIETLFVVDAMLGQDAINTAKAF 240
           DYAKRH+HDVLIIDTAGRLGIDEAMM EI A+HAAVKPIETLFVVDAMLGQDAINTAKAF
Sbjct: 181 DYAKRHYHDVLIIDTAGRLGIDEAMMHEIKALHAAVKPIETLFVVDAMLGQDAINTAKAF 240

Query: 241 SDALPLTGIVLTKLDGDSRGG 261
           SDALPLTGIVLTKLDGDSRGG
Sbjct: 241 SDALPLTGIVLTKLDGDSRGG 261


>A4G8Q6.2 A4G8Q6_HERAR Signal recognition particle protein (Fifty-four
           homolog)
          Length = 455

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 239/261 (91%), Positives = 254/261 (97%)

Query: 1   MLDNLTQRLAKVVKTMRGEARLTESNTAEMLREVRLALLEADVALPAVREFIAKVKERSV 60
           MLDNLTQRLAK VKTMRGEARLTESNTAEMLREVRLALLEADVALPAVREFI +VKE+++
Sbjct: 1   MLDNLTQRLAKAVKTMRGEARLTESNTAEMLREVRLALLEADVALPAVREFIGRVKEKAM 60

Query: 61  GEEVIGSLTPGQALVGVVQRELASLMGADLGPEASQLNFATQPPAIILMAGLQGAGKTTT 120
           GE+VIG+L+PGQALVGVVQRELA++MGADLGPEASQLNFATQPPAIILMAGLQGAGKTTT
Sbjct: 61  GEDVIGALSPGQALVGVVQRELAAIMGADLGPEASQLNFATQPPAIILMAGLQGAGKTTT 120

Query: 121 VGKLAKYLRENTRKKVLTVSADVYRPAAIGQLETVTAQAGADFFPTKTTDKPVDIALAAL 180
           VGKLAKYLRE  +KKVLTVSADVYRPAAIGQL+TVT Q GADFFP++ TDKPVDIALAAL
Sbjct: 121 VGKLAKYLREQKKKKVLTVSADVYRPAAIGQLKTVTEQVGADFFPSEITDKPVDIALAAL 180

Query: 181 DYAKRHFHDVLIIDTAGRLGIDEAMMQEISAVHAAVKPIETLFVVDAMLGQDAINTAKAF 240
           DYAKRH+HDVLIIDTAGRLGIDEAMMQEISA+HAAVKPIETLFVVDAMLGQDAINTAKAF
Sbjct: 181 DYAKRHYHDVLIIDTAGRLGIDEAMMQEISAIHAAVKPIETLFVVDAMLGQDAINTAKAF 240

Query: 241 SDALPLTGIVLTKLDGDSRGG 261
           SDALPLTGIVLTKLDGDSRGG
Sbjct: 241 SDALPLTGIVLTKLDGDSRGG 261


>F1VU61.1 F1VU61_9BURK Signal recognition particle, subunit Ffh SRP54
          Length = 457

 Score =  452 bits (1164), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 229/261 (87%), Positives = 250/261 (95%)

Query: 1   MLDNLTQRLAKVVKTMRGEARLTESNTAEMLREVRLALLEADVALPAVREFIAKVKERSV 60
           MLDNLTQRLAKVVKTMRGEARLTE+NTAEMLREVRLALLEADVALPAVREFIAKVK +++
Sbjct: 1   MLDNLTQRLAKVVKTMRGEARLTETNTAEMLREVRLALLEADVALPAVREFIAKVKTKAM 60

Query: 61  GEEVIGSLTPGQALVGVVQRELASLMGADLGPEASQLNFATQPPAIILMAGLQGAGKTTT 120
           GEEVIGSL+PGQALVGVVQ+ELA++MG DLGPEAS L+FATQPPA+ILMAGLQGAGKTTT
Sbjct: 61  GEEVIGSLSPGQALVGVVQKELAAMMGGDLGPEASLLSFATQPPAVILMAGLQGAGKTTT 120

Query: 121 VGKLAKYLRENTRKKVLTVSADVYRPAAIGQLETVTAQAGADFFPTKTTDKPVDIALAAL 180
           VGKLAK+L+E  +KKVLTVSADVYRPAAIGQL+TVTAQ GADFFP+ TTDKPVDIALAAL
Sbjct: 121 VGKLAKFLKEKHKKKVLTVSADVYRPAAIGQLQTVTAQVGADFFPSLTTDKPVDIALAAL 180

Query: 181 DYAKRHFHDVLIIDTAGRLGIDEAMMQEISAVHAAVKPIETLFVVDAMLGQDAINTAKAF 240
           D+AKRH+HDVLIIDTAGRLGID  MM EI+A+HAAVKPIETLFVVDAMLGQDAINTAKAF
Sbjct: 181 DFAKRHYHDVLIIDTAGRLGIDAEMMAEIAALHAAVKPIETLFVVDAMLGQDAINTAKAF 240

Query: 241 SDALPLTGIVLTKLDGDSRGG 261
           +D LPLTGIVLTKLDGD+RGG
Sbjct: 241 NDTLPLTGIVLTKLDGDARGG 261


>B5WSQ0.1 B5WSQ0_9BURK Signal recognition particle protein
          Length = 455

 Score =  429 bits (1102), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 209/261 (80%), Positives = 236/261 (90%)

Query: 1   MLDNLTQRLAKVVKTMRGEARLTESNTAEMLREVRLALLEADVALPAVREFIAKVKERSV 60
           MLDNLTQR+A+VVKT+RGEARLTE+NT EMLREVRLALLEADVALP VREFIAKVKE+++
Sbjct: 1   MLDNLTQRMARVVKTLRGEARLTEANTQEMLREVRLALLEADVALPVVREFIAKVKEKAL 60

Query: 61  GEEVIGSLTPGQALVGVVQRELASLMGADLGPEASQLNFATQPPAIILMAGLQGAGKTTT 120
           GEEVI SL+PGQALVGVVQREL +++G D   +AS+LN A  PPAIILMAGLQGAGKTTT
Sbjct: 61  GEEVIASLSPGQALVGVVQRELTAVIGGDYEGKASELNLAVTPPAIILMAGLQGAGKTTT 120

Query: 121 VGKLAKYLRENTRKKVLTVSADVYRPAAIGQLETVTAQAGADFFPTKTTDKPVDIALAAL 180
           VGKLAK LRE  +KKVLTVS DVYRPAAI QL+TVT Q GADFFP++   KPVDIA AA+
Sbjct: 121 VGKLAKLLREKYKKKVLTVSCDVYRPAAIAQLKTVTEQVGADFFPSEPNQKPVDIARAAV 180

Query: 181 DYAKRHFHDVLIIDTAGRLGIDEAMMQEISAVHAAVKPIETLFVVDAMLGQDAINTAKAF 240
           D+AKRH+HDVL++DTAGRLGIDE MMQEI+A+HA +KP ETLFVVDAMLGQDA+NTAKAF
Sbjct: 181 DWAKRHYHDVLLVDTAGRLGIDEVMMQEIAALHAELKPAETLFVVDAMLGQDAVNTAKAF 240

Query: 241 SDALPLTGIVLTKLDGDSRGG 261
           SDALPLTG+VLTKLDGDSRGG
Sbjct: 241 SDALPLTGVVLTKLDGDSRGG 261