BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0035.p         (85 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IWA0.1 D8IWA0_HERSS Signal recognition particle subunit SRP54 ...   156   1e-36
C3X556.1 C3X556_OXAFO Signal recognition particle                     143   9e-33
B2SYU5.1 B2SYU5_BURPP Signal recognition particle protein             140   6e-32
B1G7E1.1 B1G7E1_9BURK Signal recognition particle protein             139   1e-31
F2L7L7.1 F2L7L7_BURGA Signal recognition particle protein             139   2e-31

>D8IWA0.1 D8IWA0_HERSS Signal recognition particle subunit SRP54 protein
          Length = 456

 Score =  156 bits (394), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 78/83 (93%), Positives = 82/83 (98%)

Query: 1   MDQAEKQVRRMEGMINSMTLQERAKPELIKATRKRRIAAGAGVQVQEVNRMLAQFEQMQS 60
           MDQAEKQVRRMEG+INSMT QERAKPELIKATRKRRIAAGAGVQVQEVNRML+QFEQMQS
Sbjct: 371 MDQAEKQVRRMEGIINSMTPQERAKPELIKATRKRRIAAGAGVQVQEVNRMLSQFEQMQS 430

Query: 61  MMKKLKGGGMMKMMRSMKGMMPG 83
           MMKKLKGGGMMKMMR+MKGM+PG
Sbjct: 431 MMKKLKGGGMMKMMRNMKGMLPG 453


>C3X556.1 C3X556_OXAFO Signal recognition particle
          Length = 455

 Score =  143 bits (360), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 71/85 (83%), Positives = 78/85 (91%)

Query: 1   MDQAEKQVRRMEGMINSMTLQERAKPELIKATRKRRIAAGAGVQVQEVNRMLAQFEQMQS 60
            DQA KQV RM G+INSMT QERAKPELIKA+RKRRIAAGAGVQVQEVNR+L+QFEQMQS
Sbjct: 371 FDQANKQVGRMAGIINSMTPQERAKPELIKASRKRRIAAGAGVQVQEVNRLLSQFEQMQS 430

Query: 61  MMKKLKGGGMMKMMRSMKGMMPGMR 85
           MMKK+K GGMMK+MR +KGMMPGMR
Sbjct: 431 MMKKMKNGGMMKLMRGLKGMMPGMR 455


>B2SYU5.1 B2SYU5_BURPP Signal recognition particle protein
          Length = 455

 Score =  140 bits (353), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 70/85 (82%), Positives = 79/85 (92%)

Query: 1   MDQAEKQVRRMEGMINSMTLQERAKPELIKATRKRRIAAGAGVQVQEVNRMLAQFEQMQS 60
           M QAEKQ+RRMEG+INSMT QERAKP+LIKATRKRRIAAGAGVQVQEVNRML Q++QM++
Sbjct: 371 MGQAEKQMRRMEGIINSMTPQERAKPDLIKATRKRRIAAGAGVQVQEVNRMLNQYDQMRT 430

Query: 61  MMKKLKGGGMMKMMRSMKGMMPGMR 85
           MMKKLKGG + KMMR MKGM+PGMR
Sbjct: 431 MMKKLKGGNLQKMMRGMKGMLPGMR 455


>B1G7E1.1 B1G7E1_9BURK Signal recognition particle protein
          Length = 455

 Score =  139 bits (350), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 70/85 (82%), Positives = 78/85 (91%)

Query: 1   MDQAEKQVRRMEGMINSMTLQERAKPELIKATRKRRIAAGAGVQVQEVNRMLAQFEQMQS 60
           M QAEKQ+RRMEG+INSMT  ERAKP+LIKATRKRRIAAGAGVQVQEVNRML Q++QM++
Sbjct: 371 MSQAEKQMRRMEGIINSMTPLERAKPDLIKATRKRRIAAGAGVQVQEVNRMLNQYDQMRT 430

Query: 61  MMKKLKGGGMMKMMRSMKGMMPGMR 85
           MMKKLKGG M KMMR MKGM+PGMR
Sbjct: 431 MMKKLKGGNMQKMMRGMKGMLPGMR 455


>F2L7L7.1 F2L7L7_BURGA Signal recognition particle protein
          Length = 455

 Score =  139 bits (349), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 69/85 (81%), Positives = 77/85 (90%)

Query: 1   MDQAEKQVRRMEGMINSMTLQERAKPELIKATRKRRIAAGAGVQVQEVNRMLAQFEQMQS 60
           M QAEKQ+RRMEG+INSMT  ERAKPELIKATRKRRIAAGAGV VQEVNRML Q++QM++
Sbjct: 371 MGQAEKQIRRMEGIINSMTPAERAKPELIKATRKRRIAAGAGVPVQEVNRMLNQYDQMRT 430

Query: 61  MMKKLKGGGMMKMMRSMKGMMPGMR 85
           MMKKLKGG M KMMR +KGMMPG+R
Sbjct: 431 MMKKLKGGNMQKMMRGLKGMMPGLR 455