BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0018.p         (53 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A6GPE7.1 A6GPE7_9BURK ABC-type transporter, permease component         96   2e-18
F1VTS8.1 F1VTS8_9BURK ABC branched-chain amino acid family trans...    95   3e-18
D8IZ50.1 D8IZ50_HERSS ABC-type branched-chain amino acid transpo...    95   3e-18
Q62FT4.1 Q62FT4_BURMA Branched-chain amino acid ABC transporter,...    93   1e-17
A2W683.1 A2W683_9BURK Inner-membrane translocator                      93   1e-17

>A6GPE7.1 A6GPE7_9BURK ABC-type transporter, permease component
          Length = 294

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/53 (88%), Positives = 52/53 (98%)

Query: 1   MGSILGSIVTGLGLGVIEGLTRVFYPEISATVVFIIMAIVLMIRPAGLFGKEK 53
           MGSILGSI+TGL LG++EGLTRVFYPE+SATVVFIIMAIVLMIRPAGLFG+EK
Sbjct: 242 MGSILGSIITGLTLGIVEGLTRVFYPELSATVVFIIMAIVLMIRPAGLFGREK 294


>F1VTS8.1 F1VTS8_9BURK ABC branched-chain amino acid family transporter,
           inner membrane subunit
          Length = 294

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 48/53 (90%), Positives = 51/53 (96%)

Query: 1   MGSILGSIVTGLGLGVIEGLTRVFYPEISATVVFIIMAIVLMIRPAGLFGKEK 53
           MGSILGSI+TGL LGVIEG+TRVFYPE SATVVF+IMAIVLMIRPAGLFGKEK
Sbjct: 242 MGSILGSILTGLSLGVIEGMTRVFYPEASATVVFVIMAIVLMIRPAGLFGKEK 294


>D8IZ50.1 D8IZ50_HERSS ABC-type branched-chain amino acid transport system,
           permease component protein
          Length = 294

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 48/53 (90%), Positives = 52/53 (98%)

Query: 1   MGSILGSIVTGLGLGVIEGLTRVFYPEISATVVFIIMAIVLMIRPAGLFGKEK 53
           MGSILGSI+TGL LG+IEGLTRVFYPE+SATVVFIIMAIVLM+RPAGLFGKEK
Sbjct: 242 MGSILGSIITGLVLGLIEGLTRVFYPELSATVVFIIMAIVLMVRPAGLFGKEK 294


>Q62FT4.1 Q62FT4_BURMA Branched-chain amino acid ABC transporter, permease
           protein
          Length = 287

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/53 (88%), Positives = 51/53 (96%)

Query: 1   MGSILGSIVTGLGLGVIEGLTRVFYPEISATVVFIIMAIVLMIRPAGLFGKEK 53
           MGSILGSIVTGL LGV+EGLTRVFYPE SATVVF+IMAIVL+IRPAGLFGKE+
Sbjct: 235 MGSILGSIVTGLMLGVVEGLTRVFYPEASATVVFVIMAIVLLIRPAGLFGKER 287


>A2W683.1 A2W683_9BURK Inner-membrane translocator
          Length = 294

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/53 (90%), Positives = 50/53 (94%)

Query: 1   MGSILGSIVTGLGLGVIEGLTRVFYPEISATVVFIIMAIVLMIRPAGLFGKEK 53
           MGSILGSIVTGL LGVIEG TRVFYPE SATVVF+IMAIVL+IRPAGLFGKEK
Sbjct: 242 MGSILGSIVTGLMLGVIEGFTRVFYPEASATVVFVIMAIVLLIRPAGLFGKEK 294